Publications and Papers

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2010
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2009 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2010 ;XIX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P115115
Bracis C. A model of the ocean migration of Pacific salmon. [Internet]. 2010 . Available from: sites/default/files/papers/BracisThesis.pdf
Skalski JR, Liao S, Buchanan RA. Performance of Three Alternative Estimators of Stream Residence Time Based on Live and Dead Counts of Salmonids. North American Journal of Fisheries Management [Internet]. 2010 ;30:191-208. Available from: http://dx.doi.org/10.1577/M08-237.1
Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2009. [Internet]. 2010 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116033
Parsons AL, Skalski JR. Quantitative Assessment of Salmonid Escapement Techniques. Reviews in Fisheries Science [Internet]. 2010 ;18:301-314. Available from: http://dx.doi.org/10.1080/10641262.2010.513020
Beer WN, Anderson JJ. Sensitivity of juvenile salmonid growth to future climate trends. River Research and Applications [Internet]. 2010 . Available from: http://dx.doi.org/10.1002/rra.1390
Perry R. Survival and migration dynamics of juvenile Chinook salmon (Oncorhynchus tshawytscha ) in the Sacramento-San Joaquin River Delta. School of Aquatic & Fishery Sciences. 2010 ;Ph.D.
Clawson MV. Use of age-at-harvest information to inform wildlife management. School of Forest Resources. 2010 ;M.S.
Buchanan RA, Skalski JR. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecological Modelling [Internet]. 2010 ;221:582-589. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2009.11.014
2009
Parsons AL, Skalski JR. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588
Stover A. Estimating Pacific Northwest salmon escapement: A methods review based on statistical first principles. Quantitative Ecology and Resource Management. 2009 ;M.S.
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111391
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P109799
Skalski JR, Buchanan RA, Townsend RL, Steig TW, Hemstrom S. A Multiple-Release Model to Estimate Route-Specific and Dam Passage Survival at a Hydroelectric Project. North American Journal of Fisheries Management [Internet]. 2009 ;29:670-679. Available from: http://dx.doi.org/10.1577/M07-227.1
Anderson JJ, Beer WN. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications [Internet]. 2009 ;19:1989-2003. Available from: http://dx.doi.org/10.1890/08-0477.1
Beer WN, Anderson JJ. Predicting and Monitoring Spring Chinook Salmon Migrations on the Columbia River. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111392
Skalski JR, Buchanan RA, Griswold J. Review of Marking Methods and Release-Recapture Designs for Estimating the Survival of Very Small Fish: Examples from the Assessment of Salmonid Fry Survival. Reviews in Fisheries Science [Internet]. 2009 ;17:391-401. Available from: http://dx.doi.org/10.1080/10641260902752199
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2009. [Internet]. 2009 . Available from: sites/default/files/newsletter/salmoninsider_2009n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2009. [Internet]. 2009 . Available from: sites/default/files/newsletter/salmoninsider_2009n3summer.pdf
Parsons AL, Skalski JR. A Statistical Critique of Estimating Salmon Escapement in the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXIV. Available from: sites/default/files/papers/Skalski/D&A Volume 24 (Salmon Escapement).pdf
Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004
2008
Zabel RW, Faulkner J, Smith SG, Anderson JJ, Holmes CV, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from: http://dx.doi.org/10.1007/s10750-008-9407-z
Perry R, Skalski JR. Effects of Array Configuration on Statistical Independence of Replicated Telemetry Arrays used in Smolt Survival Studies. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXIII. Available from: sites/default/files/papers/Skalski/D&A Volume 23 (Independence of Replicated Arrays).pdf
Perry R, Skalski JR. Evaluating Wetland Restoration Projects in the Columbia River Estuary using Hydroacoustic Telemetry Arrays to Estimate Movement, Survival, and Residence Times of Juvenile Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107849
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2007 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2008 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107213
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2008 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. [Internet]. 2008 . Available from: sites/default/files/papers/Skalski/M&E Volume XVII (2008 RealTime Report).pdf
Li T. Extension of the Vitality Model and Its Application. [Internet]. 2008 . Available from: sites/default/files/papers/li_ting_thesis.pdf
Anderson JJ, Gildea MC, Williams DW, Li T. Linking growth, survival and heterogeneity through vitality. American Naturalist [Internet]. 2008 ;171:E20-E43. Available from: http://dx.doi.org/10.1086/524199
Nestler JM, Goodwin RA, Smith DL, Anderson JJ. Mathematical & Conceptual Framework for the New Discipline of Ecohydraulics. In: Wood P, Hannah D, Sadler J Hydroecology and Ecohydrology: Past, Present and Future. Hydroecology and Ecohydrology: Past, Present and Future. New York: Wiley; 2008. pp. 205-224.
Gurarie E. Models and analysis of animal movements: From individual tracks to mass dispersal. [Internet]. 2008 . Available from: http://wiki.cbr.washington.edu/qerm/sites/qerm/images/9/9f/GurarieDissertationFinalDraft.pdf
Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/salmoninsider_2008n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/salmoninsider_2008n3summer.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/newsletter_2008n1winter.pdf
Ashbrook CE. Selective fishing and its impacts on salmon: a tale of two test fisheries. School of Aquatic & Fishery Sciences. 2008 ;M.S.
Broms K. Small game population reconstruction: Model development and application. Quantitative Ecology and Resource Management. 2008 ;M.S.
Beer WN. Stock Separation of Chinook salmon at Bonneville Dam for Adult Upstream Migration Model (2008). [Internet]. 2008 . Available from: sites/default/files/papers/StockSeparationforAUM2008.pdf