Publications and Papers

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Journal Article
Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004
Anderson JJ. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs [Internet]. 2000 ;70:445-470. Available from: http://dx.doi.org/10.1890/0012-9615(2000)070%5B0445:AVBMRS%5D2.0.CO;2
Buchanan RA, Skalski JR. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecological Modelling [Internet]. 2010 ;221:582-589. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2009.11.014
Skalski JR, Smith SG, Iwamoto RN, Williams JG, Hoffmann A. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:1484-1493. Available from: http://dx.doi.org/10.1139/cjfas-55-6-1484
McMichael GA, Skalski JR, Deters KA. Survival of Juvenile Chinook Salmon during Barge Transport. North American Journal of Fisheries Management [Internet]. 2011 ;31:1187-1196. Available from: http://dx.doi.org/10.1080/02755947.2011.646455
Hyun S-Y, Hilborn R, Anderson JJ, Ernst B. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2005 ;62:1665-1680. Available from: http://dx.doi.org/10.1139/F05-071
Perry R, Brandes PL, Burau JR, Klimley PA, MacFarlane B, Michel C, Skalski JR. Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta. Environmental Biology of Fishes. 2013 ;96(2-3):381 - 392.
Beer WN, Anderson JJ. Sensitivity of juvenile salmonid growth to future climate trends. River Research and Applications [Internet]. 2010 . Available from: http://dx.doi.org/10.1002/rra.1390
Skalski JR, Buchanan RA, Griswold J. Review of Marking Methods and Release-Recapture Designs for Estimating the Survival of Very Small Fish: Examples from the Assessment of Salmonid Fry Survival. Reviews in Fisheries Science [Internet]. 2009 ;17:391-401. Available from: http://dx.doi.org/10.1080/10641260902752199
Hamel OS, Anderson JJ. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085
Parsons AL, Skalski JR. Quantitative Assessment of Salmonid Escapement Techniques. Reviews in Fisheries Science [Internet]. 2010 ;18:301-314. Available from: http://dx.doi.org/10.1080/10641262.2010.513020
Kemp PS, Anderson JJ, Vowles AS. Quantifying behaviour of migratory fish: application of signal detection theory to fisheries engineering. Ecological Engineering [Internet]. 2012 ;41:22-31. Available from: http://dx.doi.org/10.1016/j.ecoleng.2011.12.013
Skalski JR, Liao S, Buchanan RA. Performance of Three Alternative Estimators of Stream Residence Time Based on Live and Dead Counts of Salmonids. North American Journal of Fisheries Management [Internet]. 2010 ;30:191-208. Available from: http://dx.doi.org/10.1577/M08-237.1
Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5
Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056
Anderson JJ, Beer WN. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications [Internet]. 2009 ;19:1989-2003. Available from: http://dx.doi.org/10.1890/08-0477.1
Goodwin RA, Nestler JM, Anderson JJ, Weber LJ. A New Tool to Forecast Fish Movement and Passage. Hydro Review [Internet]. 2007 ;26:58-71. Available from: http://www.hydroworld.com/index/display/article-display/354303/articles/hydro-review/volume-26/issue-4/technical-articles/a-new-tool-to-forecast-fish-movement-and-passage.html
Ryding KE, Skalski JR. Multivariate regression relationships between ocean conditions and early marine survival of coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1999 ;56:2374-2384. Available from: http://dx.doi.org/10.1139/cjfas-56-12-2374
Skalski JR, Buchanan RA, Townsend RL, Steig TW, Hemstrom S. A Multiple-Release Model to Estimate Route-Specific and Dam Passage Survival at a Hydroelectric Project. North American Journal of Fisheries Management [Internet]. 2009 ;29:670-679. Available from: http://dx.doi.org/10.1577/M07-227.1
Zabel RW, Anderson JJ, Shaw P. A multiple reach model to describe the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:658-667. Available from: http://dx.doi.org/10.1139/f97-281
Beer WN, Anderson JJ. Modelling the Growth of Salmonid Embryos. Journal of Theoretical Biology [Internet]. 1997 ;189:297-306. Available from: http://dx.doi.org/10.1006/jtbi.1997.0515
Steel AE, Guttorp P, Anderson JJ, Caccia DC. Modeling Juvenile Salmon Migration Using a Simple Markov Chain. Journal of Agricultural, Biological & Environmental Statistics [Internet]. 2001 ;6:80-88. Available from: http://www.jstor.org/stable/1400355
Zabel RW, Anderson JJ. A model of the travel time of migrating juvenile salmon, with an application to Snake River spring chinook. North American Journal of Fisheries Management [Internet]. 1997 ;17:93-100. Available from: http://dx.doi.org/10.1577/1548-8675(1997)017<0093:AMOTTT>2.3.CO;2
Buchanan RA, Skalski JR. A Migratory Life-Cycle Release-Recapture Model for Salmonid PIT-Tag Investigations. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2007 ;12:325-345. Available from: http://dx.doi.org/10.1198/108571107X229331
Anderson JJ, Gurarie E, Zabel RW. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling [Internet]. 2005 ;186:196-211. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.01.014
Anderson JJ, Gildea MC, Williams DW, Li T. Linking growth, survival and heterogeneity through vitality. American Naturalist [Internet]. 2008 ;171:E20-E43. Available from: http://dx.doi.org/10.1086/524199
Bracis C, Anderson JJ. An investigation of the geomagnetic imprinting hypothesis for salmon. Fisheries Oceanography [Internet]. 2012 ;21:170-181. Available from: http://dx.doi.org/10.1111/j.1365-2419.2012.00617.x
Helu LS, Anderson JJ, Sampson DB. An individual-based fishery model and assessing fishery stability. Natural Resource Modeling [Internet]. 1999 ;12. Available from: http://dx.doi.org/10.1111/j.1939-7445.1999.tb00011.x
Lindley ST, Schick RS, Agrawal A, Goslin M, Pearson TE, Mora E, Anderson JJ, May BP, Greene S, Hanson C, et al. Historical population structure of Central Valley steelhead and its alteration by dams. San Francisco Estuary and Watershed Science [Internet]. 2006 ;4. Available from: http://escholarship.org/uc/item/1ss794fc
Lindley ST, Schick RS, Mora E, Adams PB, Anderson JJ, Greene S, Hanson C, May BP, McEwan D, MacFarlane B, et al. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science [Internet]. 2007 ;5. Available from: http://escholarship.org/uc/item/3653x9xc
Goodwin RA, Nestler JM, Anderson JJ, Weber LJ, Loucks DP. Forecasting 3-D fish movement behavior using a Eulerian-Lagrangian-agent method (ELAM). Ecological Modelling [Internet]. 2006 ;192:197-223. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.08.004
Smith SG, Muir WD, Williams JG, Skalski JR. Factors Associated with Travel Time and Survival of Migrant Yearling Chinook Salmon and Steelhead in the Lower Snake River. North American Journal of Fisheries Management [Internet]. 2002 ;22:385-405. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<0385:FAWTTA>2.0.CO;2
Buchanan RA, Skalski JR, Giorgi AE. Evaluating Surrogacy of Hatchery Releases for the Performance of Wild Yearling Chinook Salmon from the Snake River Basin. North American Journal of Fisheries Management [Internet]. 2010 ;30:1258–1269. Available from: http://dx.doi.org/10.1577/M09-175.1
Lady JM, Skalski JR. Estimators of stream residence time of Pacific salmon (Oncorhynchus spp.) based on release-recapture data. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:2580-2587. Available from: http://dx.doi.org/10.1139/f98-132
Buchanan RA, Skalski JR, Smith SG. Estimating the Effects of Smolt Transportation from Different Vantage Points and Management Perspectives. North American Journal of Fisheries Management [Internet]. 2006 ;26:460-472. Available from: http://dx.doi.org/10.1577/M05-080.1
Salinger DH, Anderson JJ. Effects of Water Temperature and Flow on Adult Salmon Migration Swim Speed and Delay. Transactions of the American Fisheries Society [Internet]. 2006 ;135:188-199. Available from: http://dx.doi.org/10.1577/T04-181.1
Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2
Enders EC, Gessel MH, Anderson JJ, Williams JG. Effects of Decelerating and Accelerating Flows on Juvenile Salmonid Behavior. Transactions of the American Fisheries Society [Internet]. 2012 ;141(2):357-364. Available from: http://dx.doi.org/10.1080/00028487.2012.664604
Beer WN, Anderson JJ. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049
Townsend RL, Skalski JR, Dillingham P, Steig TW. Correcting Bias in Survival Estimation Resulting From Tag Failure in Acoustic and Radiotelemetry Studies. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2006 ;11:183-196. Available from: http://dx.doi.org/10.1198/108571106X111323