SURPH 2.1 User Manual

Table of Contents

1. About SURPH.2
2. About This Manual
3. Getting Started
   1. Startup
   2. Select Data Type
   3. Load Input Data
      1. SURPH.1 Conversion
4. Some Basic Concepts
   1. SURPH options
   2. SURPH probabilities
   3. Model Parameters
   4. Covariates
   5. Link Function
   6. Model Definition
   7. Model
   8. SURPH Dialog Window
   9. SURPH Reports
   10. SURPH Graphs
5. Data Tools & Models
   1. Release-Recapture
      1. CJS Estimates
      2. Profile Likelihood
      3. CJS Covariance Matrix
      4. Burnham Tests
      5. Manly-Parr Estimates
      6. M-Arrays
      7. Individual Covariates
         1. Histogram
         2. CDF
   2. Known-Fate
      1. Binomial Estimates
      2. Profile Likelihood
      3. Sampling Summary
      4. Individual Covariates
         1. Histogram
         2. CDF
6. Modeling
   1. Link Functions
   2. Parameter Definitions
      1. Main Effects
         1. Examples
      2. Group Covariates
      3. Individual Covariates
      4. Release-Recapture Notes
   3. Calculate Variance
   4. Output
   5. Hypothesis Testing
      1. Likelihood Ratio Test
      2. Akaike Information Criterion
      3. Analysis of Deviance
         1. Initialization
         2. Components
   6. Model Diagnostics
      1. Survival Curves
         1. Group Covariates
         2. Individual Covariates
            1. Histogram
            2. Nonparametric
            3. Relative Risk
      2. SURPH vs CJS estimates
      3. Residual Plots
         1. vs Capture Histories
         2. QQ-Plot
7. File Formats
   1. Input Data File
8. File Operations
   1. Input Data
   2. Model Definitions
   3. Models
9. References