Active Tag Life Adjusted Survival Modeling


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Documentation for package ‘cbrATLAS’ version 0.0.1.3

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AdjSurv.fn Active Tag Life Adjusted Survival Model Fitting
atlas2flat.fn Converts ATLAS data file to a flat file format
boot.L Bootstraps observed "activation to 1st detection per site" times to get standard errors on estimated p(Li)
cjs.fn Summarizes detection histories and provides Cormack-Jolly-Seber estimates with or without adjustment of potential tag-failure
cjs.lik A likelihood function for unadjusted- or adjusted-for-taglife Cormack-Jolly-Seber (CJS) estimates
cjs.taglife.corr Estimates the length of time a tag is active (tag activation to first detection time)
correct.fn Restrains uncorrected probability estimates between 0 and 1
dayhr.fn Standardizes date-time input
harmonic Estimates harmonic mean
mean_tt2site.fn Estimates travel time harmonic mean
single.rel Single Release ATLAS Practice File.
taglife.data Taglife ATLAS Practice File.
thist0 Creates a list with counts per history and corresponding matrix of unique histories