Archive of Additions at Columbia Basin Research


What's New

5 December 2006

Status & Trends Overview
historical trends of migration performance measures estimated from a life-cycle model (ROSTER) for hatchery spring and summer Chinook and steelhead (1996-2004) added

30 November 2006

Salmon Insider - Columbia Basin Research Newsletter
Autumn 2006 issue

30 November 2006

Columbia Basin Performance Measures
expanded query options and new river condition parameters TDG Highest 12hr and Temperature 7DADM

10 November 2006

ROSTER River-Ocean Survival and Transportation Effects Routine
Version 2.0 released

3 November 2006

PitPro - PIT Tag Processor
Version 4.7 released

1 September 2006

Google Earth Interface for CBR Data - CBR configuration file for Google Earth
provides map based searches of our Status & Trends annual salmon monitoring database

3 August 2006

Salmon Insider - Columbia Basin Research Newsletter
Summer 2006 issue

30 June 2006

CWT Smolt-to-Adult Ratio (SAR) Estimates
analyses updated for all available years

5 May 2006

Salmon Insider - Columbia Basin Research Newsletter
Spring 2006 issue

17 April 2006

Ten Year Historical Run Timing reports for Adult Passage, PIT Tag Adult Returns, PIT Tag Observations, Smolt Index, and Columbia Basin ESUs datasets.
new Columbia River DART reports

23 March 2006

Salmon Insider - Columbia Basin Research Newsletter
Winter 2006 issue

6 February 2006

PIT Tag Survival and Travel Time Analysis
analyses updated

19 October 2005

Salmon Insider - Columbia Basin Research Newsletter
Autumn 2005 issue

8 August 2005

PitPro - PIT Tag Processor
version 3.0 released

5 August 2005

Salmon Insider - Columbia Basin Research Newsletter
Summer 2005 issue

30 June 2005

CWT Smolt-to-Adult Ratio (SAR) Estimates
analyses updated for all available years

27 April 2005

Salmon Insider - Columbia Basin Research Newsletter
Spring 2005 issue

14 March 2005

javaDART - Java-based DART Graphics Tool
official release of version 2.0 applet and application

25 January 2005

Salmon Insider - Columbia Basin Research Newsletter
Winter 2005 issue

23 November 2004

Evaluation of the 2003 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime
post season analysis by W. Nicholas Beer, Susannah Iltis, Chris Van Holmes, and James J. Anderson

3 November 2004

Columbia Basin Performance Measures
Adult PIT Tag query added and graphics upgrade

27 October 2004

Salmon Insider - Columbia Basin Research Newsletter
Autumn 2004 issue

5 August 2004

Evaluation of the 2003 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon returning to the Columbia and Snake Rivers
post season analysis by W. Nicholas Beer, David Salinger, Susannah Iltis, and James J. Anderson

13 July 2004

Salmon Insider - Columbia Basin Research Newsletter
Summer 2004 issue

4 May 2004

Pacific Northwest Index (PNI)
annual update with data from 1891 through 2003

15 April 2004

Mid Columbia Status for Juvenile and Adult Salmon
web portal for Mid Columbia salmon passage and river conditions

12 April 2004

Smolt-to-Adult (SAR) Estimates for Coded Wire Tag
analyses updated for 1995-2002 returns

5 April 2004

Salmon Insider - Columbia Basin Research Newsletter
Spring 2004 issue

16 March 2004

Adult Escapement for the Columbia Basin
compare NMFS interim target abundances with historical trend data

12 March 2004

Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model
white paper by Chris Van Holmes and James J. Anderson

9 February 2004

PIT Tag Survival and Travel Time Analysis
analyses for Sawtooth Trap added

1 February 2004

Salmon Insider - Columbia Basin Research Newsletter
Winter 2004 issue

28 January 2004

The Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin
white paper by James J. Anderson
Sensitivity of salmon survival to temperature in the mainstem Snake and Columbia Rivers
white paper by W. Nicholas Beer and James J. Anderson
Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation
paper by R. Andrew Goodwin, James J. Anderson, and John M. Nestler submitted to the 6th International Conference on Hydroinformatics 2004, 21-24 June 2004, Singapore

17 December 2003

javaDART - Java-based DART Graphics Tool
version 1.7 released for year 2004

9 December 2003

Toward a Resolution of the Flow/Survival Debate and the Impacts of Flow Augmentation and Water Withdrawal in the Columbia/Snake River System
draft white paper by James J. Anderson
An individual-based fishery model and assessing fishery stability DRAFT
draft paper by James J. Anderson published in 1999

2 December 2003

PIT Tag Survival and Travel Time Analysis
analyses for 2003 added

5 November 2003

Stress, Growth and Survival of Juvenile Chinook Salmon
Master of Science Thesis by Molly M. Cobleigh

28 October 2003

DART Adult PIT Tag Conversion Rate report
updated to include overwintering
DART PIT Tag Release and Observation Summary report
new version of the survival and mean travel time estimates program installed which includes harmonic mean travel time estimates

23 October 2003

PIT Tag Survival and Travel Time Analysis
analyses for Rapid River Hatchery and Imnaha Trap added

26 August 2003

Columbia Basin Performance Measures
exposures for inseason passage and water forecasts added

5 August 2003

PIT Tag Survival and Travel Time Analysis
analysis for Clearwater Trap added

17 July 2003

Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP
white paper by Christopher Van Holmes and James J. Anderson

17 July 2003

Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors
white paper by W. Nicholas Beer, Susannah Iltis, and James J. Anderson

15 July 2003

Total Dissolved Gas submodel parameter calibration for use with CRiSP
white paper by W. Nicholas Beer

1 May 2003

Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease
paper by Owen S. Hamel and James J. Anderson

1 April 2003

Vitality Model
vitality-based survival model and parameter fitting code

22 March 2003

An analysis of smolt survival with implications to flow management
paper by J. Anderson and C. Van Holmes

5 March 2003

PIT Tag Survival and Travel Time Analysis
analysis for Wells and Ringold hatcheries added
PitPro
program for reading raw PIT tag data and creating a SURPH input file

19 February 2003

Pacific Northwest Index (PNI)
annual update with data from 1891 through 2002

13 February 2003

USER version 2.4a
User Specified Estimation Routine for Windows

4 February 2003

SampleSize
a suite for four sample size programs for estimating parameters: SingleRelease, PairedRelease, PairedRadio, and TransportInRiverRatio

14 January 2003

Columbia Basin Performance Measures
new features added

19 December 2002

javaDART version 1.6
new version released

18 December 2002

Smolt-to-Adult Ratio (SAR) Estimates for Coded Wire Tag
updated for additional analyzed hatcheries

10 December 2002

PIT Tag Survival and Travel Time Analysis
online survival and travel time analysis and plots for Columbia Basin hatchery salmon

6 November 2002

Comparing methods for inferring site biological condition from a sample of site biota
Kevin W. Brinck, Master of Science Thesis.

30 October 2002

Inseason Forecasts of Sockeye Salmon Returns to the Bristol Bay Districts of Alaska
Saang-Yoon Hyun, Final Ph.D.

10 September 2002

Adult ESU Mean Travel Time Estimates
mean travel time estimates for returning ESU adult populations based on PIT Tag detections at adult ladders

6 August 2002

javaDART version 1.5
new version released, expands historical year range for Adult Passage data at Bonneville

19 July 2002

Smolt-to-Adult Ratio (SAR) Estimates for Coded Wire Tag
online data analysis and plots of SARs for CWT hatchery salmon from Oregon, Washington and Idaho

28 May 2002

Growth of salmonids: eggs and fry
new interface and data specification controls

7 May 2002

Columbia / Snake River Adult Passage Predictions
Adult total run size prediction graph at Bonneville added

8 April 2002

Columbia / Snake River Adult Passage Predictions
2002 inseason predictions started

13 March 2002

History of the Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin
working paper by James J. Anderson

12 March 2002

Columbia Basin Performance Measures
online data analysis of fish exposure to hydrosystem conditions

13 February 2002

USER 2.0
User Specified Estimation Routine for Windows

15 January 2002

In-stream factors affecting juvenile salmonid migration, DRAFT
E. Ashley Steel, Final Ph.D. dissertation (1999) available through the University of Washington
A comparison of methods for measuring visual water clarity, DRAFT
paper by E. Ashley Steel; in press: Journal of the North American Benthological Society
Modeling Juvenile Salmon Migration Using a Simple Markov Chain, DRAFT
paper by Steel, E.A., P. Guttorp, J.J. Anderson and D.C. Caccia; final version in: Journal of Agricultural, Biological & Environmental Statistics

20 December 2001

Pacific Northwest Index (PNI)
updated for 2001 data

13 November 2001

The Dynamics and Effects of Bacterial Kidney Disease in Snake River Spring Chinook Salmon (Oncorhynchus tshawyscha)
Owen Sprague Hamel, Ph.D. dissertation

23 October 2001

Columbia Basin Anadromous Hatcheries Information and Locations
provides general information about hatcheries in the Columbia Basin and their locations

10 October 2001

Northwestern Regional Temperature Data Analysis
analyses of temperature data for Northwest regional sites with 50 or more daily mean temperatures

17 September 2001

Columbia / Snake River Adult Passage Predictions
upstream migration forecasts for chinook passing Columbia and Snake River dams -- Bonneville to Lower Granite

28 August 2001

An agent-based event driven foraging model
paper by James J. Anderson

18 June 2001

javaDART Java-based DART Graphics Tool
new release with expanded historic adult and river data for Bonneville, The Dalles, John Day, and McNary dams

12 June 2001

CRiSP1.6 Theory and Calibration
manual in html format

7 June 2001

Modeling the impacts of John Day drawdown on the survival of salmonid stocks
paper by James J. Anderson, Richard W. Zabel, and Richard A. Hinrichsen

31 May 2001

Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook
paper by W. Nicholas Beer and James J. Anderson published in Can. J. Fish. Aquat. Sci.

19 May 2001

Testimony of James J. Anderson before the Subcommittee on Water and Power of the U.S. House of Representatives Committee on Resources
this testimony considers the current science and status of the fish populations of the Columbia River System

17 May 2001

Inseason Forecasts
new layout, forecasts have been organized by category, and ESU population passage predictions have been added for mainstem Columbia River

16 May 2001

Coast Model
new distribution for Win32 systems and the Coast Model Manual has been updated

11 May 2001

DART Endangered Species (NMFS ESU) Run Timing Analysis
includes mean travel time estimates, passage forecasts at McNary, and passage predictions with run timing plot at McNary for each ESU population

5 April 2001

javaDART Java-based DART Graphics Tool
new Win32 version with simplified installation process

19 March 2001

USER 1.0 User Specified Estimation Routine
flexible software tool that allows investigators to develop statistical models for analyzing tagging and counts data

13 February 2001

javaDART version 1.1
new release of javaDART, the java-based DART graphics tool

8 February 2001

Publications and Papers section
new layout, several sort options, and expanded information

2 February 2001

Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime
postseason analysis by W N Beer, S Iltis, C Van Holmes, and J Anderson

31 January 2001

Application of the Out-Migrant Survival Simulator (OMSS) using the SWARM modeling environment to study smolt-predator interactions
paper by W N Beer and J Anderson

8 January 2001

A vitality based model relating stressors and environmental properties to organism survival - DRAFT
paper by J Anderson

20 December 2000

CRiSP.1.6 Theory and Calibration manual
1.2M pdf only

13 December 2000

Effects of flow augmentation on Snake River fall chinook
paper by J Anderson, R Hinrichsen, and C Van Holmes
Testimony of James J. Anserson before the Subcommittee on Fisheries, Wildlife & Water of the Senate Committee on Environment and Public Works
Boise, Idaho, November 20, 2000

12 December 2000

SURPH Version 2 SURvival under Proportional Hazards
release of version 2 for downloading, includes new features and capabilities

6 December 2000

PIT-Tag Release & Observation Summary report with option to generate Survival and Mean Travel Time Estimates
new feature is now available on the DART web page

16 October 2000

Heat Budget of Water Flowing through Hells Canyon and the Effect of Flow Augmentation on Snake River Water Temperature
paper by James Anderson

13 October 2000

Heat Budget Snake River Temperature Data
Heat Budget paper companion data file, csv format

6 September 2000

DART Location Map
map of data collection locations in the Columbia Basin contained in the DART database

19 July 2000

Analysis of Fish Response to Flows in the 1991 Pasco Flume Experiments
1991 paper by James Anderson, pdf only
Assessment of the risk of pile driving to juvenile fish
1990 paper by James Anderson, pdf only

2 June 2000

Egg Growth of Pre-emergent Salmon
tool to grow fish under user determined conditions

1 June 2000

Testimonies by James J. Anderson to the U.S. House of Representatives and U.S. Senate
testimonies by James J. Anderson

18 April 2000

javaDART - Java-based DART Graphics Tool
release of version 1 (beta) for downloading

14 April 2000

PATH Spring and Fall Chinook Data Files for CRiSP.1.6 and CRiSP.1.5.5
specialized distribution of data files for downloading

13 January 2000

Evaluation of the 1999 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime
postseason analysis paper by CBR staff

10 January 2000

Official Release of CRiSP Passage v1.6.0
the official release of CRiSP Passage v1.6.0 is available for downloading

16 December 1999

Coast Model Executable, Data Files, Documentation and Source Code
release of Coast Model for downloading

22 July 1999

Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime
postseason analysis paper by CBR staff

24 May 1999

Application of the Out-Migrant Survival Simulator using the SWARM modeling environment to study smolt-predator interactions - DRAFT
paper by W. Nicholas Beer
Optimization of Spill for Reduction of Dam and Reservoir Mortality in CRiSP - DRAFT
paper by Steven Kropp

14 April 1999

Growth of Snake River chinook salmon
paper by W. Nicholas Beer

5 April 1999

1999 Inseason Forecasts
1999 Inseason Forecasts for TDG, Temperature, Passage Bar Graphs, and Smolt Passage now available

1 February 1999

A Personal In-side Review of PATH
paper by James Anderson

18 December 1998

New Graphing Option - X,Y Plot - for Columbia River DART
plots two River Variables against each other, rather than against time

20 August 1998

Sport Fishing & Recreation
provides quick and easy access to sport fishing & recreation information in the Columbia River Basin

8 June 1998

1998 Inseason Forecasts
started 1998 Inseason Forecasts for Subyearling Chinook Smolt Passage

29 April 1998

Official Release of CRiSP Passage v1.5.5
the official release of CRiSP Passage v 1.5.5 is available for downloading

15 April 1998

1998 Inseason Forecasts
1998 Inseason Forecasts for Smolt Passage are now available

3 April 1998

1998 Inseason Forecasts
1998 Inseason Forecasts for Total Dissolved Gas and Passage Bar Graphs are now available

18 December 1997

CRiSP Harvest Manual
updated, now available in both html and pdf

9 December 1997

Hydroelectric Project Information for Columbia Basin
updated and reorganized to facilitate information access

27 October 1997

Migration Bibliography
updated and expanded 27 October 1997

23 October 1997

Search Columbia Basin Research Web Site
searchable index of HTML documents on our web site

21 October 1997

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume VII: Monte-Carlo Comparison of Confidence Interval Procedures for Estimating Survival in a Release-Recapture Study, with Applications to Snake River Salmonids
paper by Alan Lowther and John Skalski
Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume VIII: A new model for estimating survival probabilities and residualization from a release-recapture study of fall chinook salmon (Oncorhynchus tschawytscha) smolts in the Snake River
paper by Alan Lowther and John Skalski

8 October 1997

Decadal climate cycles and declining Columbia River salmon
paper by James Anderson, updated 26 September 1997

2 October 1997

CRiSP Passage v1.5.4 (Win32 Alpha) is now available
alpha release of the CRiSP Passage model for Windows 95/NT environment

25 September 1997

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume IX: A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988
paper by R Townsend and J Skalski
Monitoring and Evaluation of Smolt Migration in the Columbia Basin, Volume II: Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Subyearling Chinook in the Snake River Basin using Program RealTime
postseason evaluation by R Townsend, J Skalski, and D Yasuda

15 September 1997

CRiSP Harvest v3.0.6 is now online
the manual has been incorporated into the Help system and many bugs have been fixed

6 June 1997

Mid-Columbia Spill Decision for Outmigration
decision tree represents decision criteria for managing spill at Priest Rapids and Wanapum Dams -- java applet

5 June 1997

Total Dissolved Gas (TDG) Forecasts for Snake and Columbia Rivers
predicts gas production from spill (equations developed by USACE Waterways Experiment Station)

14 April 1997

Inseason Migratory Forecasts
the season has started for Snake and Mid-Columbia Yearling Chinook

7 March 1997

CRiSP Harvest v3.0.5 (Windows 95/NT 32bit)
maturation rates now included
Spring and Fall Transition Dates
provisional data of the spring and fall transitions of coastal winds

19 February 1997

Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin using Program RealTime
post season analysis

14 February 1997

Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Subyearling Fall Chinook in the Snake River Basin using Program RealTime
post season analysis

31 January 1997

Decadal Scale Climate Pattern and Salmon Survival: Indicators, Interactions and Implications
paper for NMFS Workshop on Estuaries and Ocean Survival of Salmon held March 1996
Analysis of reported release and collection results from Cramer (1996) in comparison to CRiSP v1.5.3
short report

30 January 1997

What's New in the CRiSP Library
listing of new documents acquired

13 January 1997

Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Yearling Chinook at Multiple Locations in the Snake and Columbia River Basins using CRiSP/RealTime
post season analysis
Radio Telemetry Survey
juvenile salmon radio tracks
Harvest Modeling Project
development of a model for the harvest and migration of salmon on the Pacific coast of NA

27 November 1996

Columbia River Salmon Passage Harvest Model, CRiSP Harvest v3.0.4 (Windows 95/NT 32bit)
newest release, the map now includes Mercator projection

22 October 1996

Climate Indicators of Salmon Survival
correlation of salmon survival and catch measures with several Pacific Northwest climate indices

17 October 1996

Pacific Northwest Index PNI
a composite climate index useful in the study of climate effects on salmon productivity trends
CRiSP.1 Columbia River Salmon Passage model
release of CRiSP.1.5.3, demo available as well as new binaries and data to download

10 October 1996

A model of the travel time of migrating juvenile salmon, with an application to Snake River spring chinook
accepted by North American Journal of Fisheries Management
A multiple reach model to describe the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha)
submitted to Canadian Journal of Fisheries and Aquatic Sciences

10 September 1996

Snake River yearling chinook travel time estimation
memo to NMFS

16 August 1996

Application of a Computer Model to the Sacramento River and Major Tributaries in Regard to Chinook Salmon (Oncorhynchus tshawytscha) Juvenile Migration
paper on the feasibility of applying the CRiSP model to the Sacramento River system

12 August 1996

CRiSP validation against preliminary 1996 NMFS survival results
memo to NMFS

7 August 1996

CRiSP.1.5 Manuals, Columbia River Salmon Passage Model
online versions of the User Manual and Theory, Calibration & Validation Manual

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Please direct questions or comments to:
web@cbr.washington.edu
Columbia Basin Research,
School of Aquatic & Fishery Sciences,
University of Washington
Monday, 25-Feb-2008 13:13:46 PST