Lindley ST, Schick RS, Mora E, Adams PB, Anderson JJ, Greene S, Hanson C, May BP, McEwan D, MacFarlane B, et al. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science [Internet]. 2007 ;5. Available from: http://escholarship.org/uc/item/3653x9xc

Buchanan RA, Conquest LL. How many does it pay to rank? Linear and quadratic cost models to estimate a population mean. Journal of Statistical Theory and Applications. 2007 ;6.

VanHolmes C. Mean Spring and Fall Upwelling Transition Dates off the Oregon and Washington Coasts. [Internet]. 2007 . Available from: sites/default/files/papers/trans.cbrmean.pdf

Buchanan RA, Skalski JR. A Migratory Life-Cycle Release-Recapture Model for Salmonid PIT-Tag Investigations. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2007 ;12:325-345. Available from: http://dx.doi.org/10.1198/108571107X229331

Goodwin RA, Nestler JM, Anderson JJ, Weber LJ. A New Tool to Forecast Fish Movement and Passage. Hydro Review [Internet]. 2007 ;26:58-71. Available from: http://www.hydroworld.com/index/display/article-display/354303/articles/hydro-review/volume-26/issue-4/technical-articles/a-new-tool-to-forecast-fish-movement-and-passage.html

Beer WN. Run timing of adult Chinook salmon passing Bonneville dam on the Columbia River. [Internet]. 2007 . Available from: sites/default/files/papers/chinook.run.timing.2007.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2007. [Internet]. 2007 . Available from: sites/default/files/newsletter/newsletter_2007n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2007. [Internet]. 2007 . Available from: sites/default/files/newsletter/newsletter_2007n3summer.pdf

Anderson JJ. Characterizing System Failure Curves with Vitality. Army Science Conference, 26th [Internet]. 2008 . Available from: sites/default/files/papers/anderson/2008_army26thscienceconf.pdf

Zabel RW, Faulkner J, Smith SG, Anderson JJ, VanHolmes C, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from: http://dx.doi.org/10.1007/s10750-008-9407-z

Perry R, Skalski JR. Effects of Array Configuration on Statistical Independence of Replicated Telemetry Arrays used in Smolt Survival Studies. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXIII. Available from: sites/default/files/papers/Skalski/D&A Volume 23 (Independence of Replicated Arrays).pdf

Perry R, Skalski JR. Evaluating Wetland Restoration Projects in the Columbia River Estuary using Hydroacoustic Telemetry Arrays to Estimate Movement, Survival, and Residence Times of Juvenile Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107849

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2007 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2008 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107213

Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2008 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. [Internet]. 2008 . Available from: sites/default/files/papers/Skalski/M&E Volume XVII (2008 RealTime Report).pdf

Li T. Extension of the Vitality Model and Its Application. [Internet]. 2008 . Available from: sites/default/files/papers/li_ting_thesis.pdf

Anderson JJ, Gildea MC, Williams DW, Li T. Linking growth, survival and heterogeneity through vitality. American Naturalist [Internet]. 2008 ;171:E20-E43. Available from: http://dx.doi.org/10.1086/524199

Nestler JM, Goodwin RA, Smith DL, Anderson JJ. Mathematical & Conceptual Framework for the New Discipline of Ecohydraulics. In: Wood P, Hannah D, Sadler J Hydroecology and Ecohydrology: Past, Present and Future. Hydroecology and Ecohydrology: Past, Present and Future. New York: Wiley; 2008. pp. 205-224.

Gurarie E. Models and analysis of animal movements: From individual tracks to mass dispersal. [Internet]. 2008 . Available from: http://wiki.cbr.washington.edu/qerm/sites/qerm/images/9/9f/GurarieDissertationFinalDraft.pdf

Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/salmoninsider_2008n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/salmoninsider_2008n3summer.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2008. [Internet]. 2008 . Available from: sites/default/files/newsletter/newsletter_2008n1winter.pdf

Ashbrook CE. Selective fishing and its impacts on salmon: a tale of two test fisheries. School of Aquatic & Fishery Sciences. 2008 ;M.S.

Broms K. Small game population reconstruction: Model development and application. Quantitative Ecology and Resource Management. 2008 ;M.S.

Beer WN. Stock Separation of Chinook salmon at Bonneville Dam for Adult Upstream Migration Model (2008). [Internet]. 2008 . Available from: sites/default/files/papers/StockSeparationforAUM2008.pdf

Parsons AL, Skalski JR. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588

Buchanan RA, Skalski J, McMichael GA. Differentiating mortality from delayed migration in subyearling fall Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2009 ;66(12):2243 - 2255. Available from: https://doi.org/10.1139/F09-154

Stover A. Estimating Pacific Northwest salmon escapement: A methods review based on statistical first principles. Quantitative Ecology and Resource Management. 2009 ;M.S.

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111391

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P109799

Skalski JR, Buchanan RA, Townsend RL, Steig TW, Hemstrom S. A Multiple-Release Model to Estimate Route-Specific and Dam Passage Survival at a Hydroelectric Project. North American Journal of Fisheries Management [Internet]. 2009 ;29:670-679. Available from: http://dx.doi.org/10.1577/M07-227.1

Anderson JJ, Beer WN. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications [Internet]. 2009 ;19:1989-2003. Available from: http://dx.doi.org/10.1890/08-0477.1

Beer WN, Anderson JJ. Predicting and Monitoring Spring Chinook Salmon Migrations on the Columbia River. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111392

Skalski JR, Buchanan RA, Griswold J. Review of Marking Methods and Release-Recapture Designs for Estimating the Survival of Very Small Fish: Examples from the Assessment of Salmonid Fry Survival. Reviews in Fisheries Science [Internet]. 2009 ;17:391-401. Available from: http://dx.doi.org/10.1080/10641260902752199

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2009. [Internet]. 2009 . Available from: sites/default/files/newsletter/salmoninsider_2009n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2009. [Internet]. 2009 . Available from: sites/default/files/newsletter/salmoninsider_2009n3summer.pdf

Parsons AL, Skalski JR. A Statistical Critique of Estimating Salmon Escapement in the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXIV. Available from: sites/default/files/papers/Skalski/D&A Volume 24 (Salmon Escapement).pdf

Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004

Skalski JR, Townsend RL, Steig TW, Hemstrom S. Comparison of Two Alternative Approaches for Estimating Dam Passage Survival of Salmon Smolts. North American Journal of Fisheries Management [Internet]. 2010 ;30:831-839. Available from: http://dx.doi.org/10.1577/M09-103.1

Buchanan RA, Skalski JR, Giorgi AE. Evaluating Surrogacy of Hatchery Releases for the Performance of Wild Yearling Chinook Salmon from the Snake River Basin. North American Journal of Fisheries Management [Internet]. 2010 ;30:1258–1269. Available from: http://dx.doi.org/10.1577/M09-175.1