Publications and Papers
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. 2012 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2015 p. 145. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
. 2013 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 139. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
. 2014 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic & Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2014 FINAL.PDF
. 2014 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 228. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
. 2015 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic and Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2015 FINAL.pdf
. 2015 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 208. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
. 2016 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic and Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2016 FINAL.pdf
. 2016 South Delta Chinook salmon survival study. Ed. P. Brandes and B. Matthias; 2021.
. 2017 South Delta Chinook salmon survival study. Ed. P. Brandes, G. Castillo, and B. Matthias; 2021.
. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x
. Anadromous salmonids in the delta: new science 2006–2016. San Francisco Estuary and Watershed Science [Internet]. 2016 ;14(2). Available from: https://escholarship.org/uc/item/27f0s5kh
. Analysis of Fish Response to Flows in the 1991 Pasco Flume Experiments. [Internet]. 1991 . Available from: sites/default/files/papers/anderson/acoe92.pdf
. Analysis of reported release and collection results from Cramer (1996) in comparison to CRiSP v1.5.3. [Internet]. 1997 . Available from: sites/default/files/papers/cramer.pdf
. An analysis of smolt survival with implications to flow management. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf
. Analysis of Snake River Spill: Information based on the CRiSP research project. Testimony before the Subcommittee on Water and Power of the Senate Energy and Natural Resources Committee June 1995. [Internet]. 1995 . Available from: sites/default/files/papers/anderson/testimonies/senate.june.95.pdf
. Analyzing adult returns to assess ocean effects and salmon survival relationships. Quantitative Ecology and Resource Management. 1998 ;M.S.
. Application of a Computer Model to the Sacramento River and Major Tributaries in Regard to Chinook Salmon (Oncorhynchus tshawytscha) Juvenile Migration. [Internet]. 1996 . Available from: papers/sacramento
. Application of an Eulerian-Lagrangian-Agent method (ELAM) to rank alternative designs of a juvenile fish passage facility. J. Hydroinformatics [Internet]. 2006 ;8:271-295. Available from: http://dx.doi.org/10.2166/hydro.2006.006
. Application of the Out-Migrant Survival Simulator (OMSS) using the SWARM modeling environment to study smolt-predator interactions. [Internet]. 2000 . Available from: sites/default/files/papers/swarmfest.pdf
. Application of the Out-Migrant Survival Simulator using the SWARM modeling environment to study smolt-predator interactions: Modeling Support to Army Corps of Engineers Columbia River Fisheries Programs, DRAFT. [Internet]. 1999 . Available from: sites/default/files/papers/swarm.report.coe.fm.pdf
. Assessing compliance with fish survival standards: a case study at Rock Island Dam, Washington. Environmental Science & Policy [Internet]. 2012 ;18:45-51. Available from: http://dx.doi.org/10.1016/j.envsci.2012.01.001
. Assessing hazards in wild populations using auxiliary variables in tag-release models. Quantitative Ecology and Resource Management. 1991 ;Ph.D.
. Assessing seasonal and biological indices of juvenile Chinook Salmon for freshwater decision triggers that increase ocean survival. Freshwater Science [Internet]. 2022 . Available from: https://www.journals.uchicago.edu/doi/10.1086/720007
. Assessment of the risk of pile driving to juvenile fish. [Internet]. 1990 . Available from: sites/default/files/papers/anderson/deep.foundations.pdf
. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588
. Calculating the variance of the finite rate of population change from a matrix model in Mathematica. Special section: Advanced Technology for Environmental Modelling [Internet]. 2007 ;22(3):359 - 364. Available from: https://www.sciencedirect.com/science/article/pii/S1364815206000028
. The changing physical and ecological meanings of North Pacific Ocean climate indices . Proceedings of the National Academy of Sciences. 2020 ;117:7665-7671.
. Characteristics of annual water temperature profiles in snowmelt-influenced and rain-dominated watersheds. [Internet]. 2007 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102771
. Characterizing System Failure Curves with Vitality. Army Science Conference, 26th [Internet]. 2008 . Available from: sites/default/files/papers/anderson/2008_army26thscienceconf.pdf
. Chinook Salmon Harvesting Model CRiSP Harvest Manual. [Internet]. 1997 . Available from: sites/default/files/manuals/crisp2_manual.pdf
. Climate Indicators of Salmon Survival. [Internet]. 1996 . Available from: sites/default/files/papers/anderson/draft.pdf
. Coast Model Documentation Manual. [Internet]. 1999 . Available from: sites/default/files/manuals/coastmodel.pdf
. Columbia River Salmon Passage Model CRiSP.1.5 Theory, Calibration and Validation for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_theory.pdf
. Columbia River Salmon Passage Model CRiSP.1.5 User manual for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_user.pdf
. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000 . Available from: sites/default/files/manuals/crisp16_tc.pdf
. Columbia River World Wide Web Group. [Internet]. 1995 . Available from: papers/anderson/webgrp
. Combining Migration History, River Conditions, and Fish Condition to Examine Cross-Life-Stage Effects on Marine Survival in Chinook Salmon. Transactions of the American Fisheries Society. 2017 ;146(3):408-421.
. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf
. Comparison of Mainstem Recovery Options Recover-1 and DFOP. [Internet]. 1994 . Available from: sites/default/files/papers/anderson/recover1.pdf
. Comparison of mechanistic and empirical methods for modeling embryo and alevin development in Chinook salmon. North American Journal of Aquaculture [Internet]. 1999 ;61:126-134. Available from: http://dx.doi.org/10.1577/1548-8454(1999)061<0126:COMAEM>2.0.CO;2