Publications and Papers
Salmon Insider Columbia Basin Research Newsletter Autumn 2006. [Internet]. 2006 . Available from: sites/default/files/newsletter/newsletter_2006n4autumn.pdf
Salmon Insider Columbia Basin Research Newsletter Spring 2006. [Internet]. 2006 . Available from: sites/default/files/newsletter/newsletter_2006n2spring.pdf
Salmon Insider Columbia Basin Research Newsletter Summer 2006. [Internet]. 2006 . Available from: sites/default/files/newsletter/newsletter_2006n3summer.pdf
Salmon Insider Columbia Basin Research Newsletter Winter 2006. [Internet]. 2006 . Available from: sites/default/files/newsletter/newsletter_2006n1winter.pdf
. A Summary of Methods for Conducting Salmonid Fry Mark-Recapture Studies for Estimating Survival in Tributaries. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2006 ;XXI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025091-2
. Contaminants as viral cofactors: assessing indirect population effects. Aquatic Toxicology [Internet]. 2005 ;71:13-23. Available from: http://dx.doi.org/10.1016/j.aquatox.2004.10.006
. Effect of Multiple Turbine Passage on Juvenile Snake River Salmonid Survival. [Internet]. 2005 . Available from: http://www.pnl.gov/main/publications/external/technical_reports/PNNL-15450.pdf
. Estimation of catch parameters from a fishery observer program with multiple objectives. Quantitative Ecology and Resource Management. 2005 ;Ph.D.
. Evaluation of the 2004 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2005 ;XII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-4
. Evaluation of Wanapum Dam Bypass Configurations for Outmigrating Juvenile Salmon Using Virtual Fish: Numerical Fish Surrogate (NFS) Analysis. [Internet]. 2005 . Available from: http://el.erdc.usace.army.mil/elpubs/pdf/trel05-7.pdf
. Guidelines and Suggested Protocols for Conducting, Analyzing, and Reporting Juvenile Salmonid Survival Studies in the Columbia River Basin. [Internet]. 2005 . Available from: sites/default/files/papers/Guidelines_and_Protocols_FINAL_DRAFT.pdf
. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling [Internet]. 2005 ;186:196-211. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.01.014
. Release-recapture models for migrating juvenile and adult salmon in the Columbia and Snake Rivers using PIT tag and radiotelemetry data. Quantitative Ecology and Resource Management. 2005 ;Ph.D.
Salmon Insider Columbia Basin Research Newsletter Autumn 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n4autumn.pdf
Salmon Insider Columbia Basin Research Newsletter Spring 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n2spring.pdf
Salmon Insider Columbia Basin Research Newsletter Summer 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n3summer.pdf
Salmon Insider Columbia Basin Research Newsletter Winter 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n1winter.pdf
. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2005 ;62:1665-1680. Available from: http://dx.doi.org/10.1139/F05-071
. Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation. Hydroinformatics [Internet]. 2004 ;1:254-261. Available from: http://dx.doi.org/10.1142/9789812702838_0031
. Evaluation of the 2003 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon returning to the Columbia and Snake Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/PO.Adult.2003.pdf
. Evaluation of the 2003 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2004 . Available from: sites/default/files/papers/PO.2003.pdf
. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model. [Internet]. 2004 . Available from: sites/default/files/papers/2004SummerSpill.pdf
Salmon Insider Columbia Basin Research Newsletter Autumn 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n4autumn.pdf
Salmon Insider Columbia Basin Research Newsletter Spring 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n2spring.pdf
Salmon Insider Columbia Basin Research Newsletter Summer 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n3summer.pdf
Salmon Insider Columbia Basin Research Newsletter Winter 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n1winter.pdf
. Sensitivity of salmon survival to temperature in the mainstem Snake and Columbia Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/beer-anderson2004.pdf
. An analysis of smolt survival with implications to flow management. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf
. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960
. Evaluation of the 2002 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2003 . Available from: sites/default/files/papers/PO.2002.pdf
. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6
. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003 . Available from: sites/default/files/papers/temp.exposure.6.pdf
. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5
. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/2003SummerSpill.pdf
. Statistical Framework for Monitoring Basal Area Coverage of Eelgrass in Puget Sound. [Internet]. 2003 . Available from: sites/default/files/papers/Skalski/Skalski 2003 - Stat Framework for Basal Area Coverage of Eelgrass.pdf
. Stress, Growth and Survival of Juvenile Chinook Salmon. [Internet]. 2003 . Available from: sites/default/files/papers/cobleigh_thesis.pdf
. Total Dissolved Gas submodel parameter calibration for use with CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/gascalibration2003.2.pdf
. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x
. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf