Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n4autumn.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n3summer.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n1winter.pdf

Beer WN, Anderson JJ. Sensitivity of salmon survival to temperature in the mainstem Snake and Columbia Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/beer-anderson2004.pdf

Anderson JJ, Holmes CV. An analysis of smolt survival with implications to flow management. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf

Salinger DH, Rockafellar RT. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Higle JL, Römisch W Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2002 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2003 . Available from: sites/default/files/papers/PO.2002.pdf

Burgess C, Skalski JR. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6

Beer WN, Iltis S, Anderson JJ. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003 . Available from: sites/default/files/papers/temp.exposure.6.pdf

Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5

Holmes CV, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/2003SummerSpill.pdf

Skalski JR. Statistical Framework for Monitoring Basal Area Coverage of Eelgrass in Puget Sound. [Internet]. 2003 . Available from: sites/default/files/papers/Skalski/Skalski 2003 - Stat Framework for Basal Area Coverage of Eelgrass.pdf

Cobleigh MM. Stress, Growth and Survival of Juvenile Chinook Salmon. [Internet]. 2003 . Available from: sites/default/files/papers/cobleigh_thesis.pdf

Beer WN. Total Dissolved Gas submodel parameter calibration for use with CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/gascalibration2003.2.pdf

Anderson JJ. Toward a Resolution of the Flow/Survival Debate and the Impacts of Flow Augmentation and Water Withdrawal in the Columbia/Snake River System. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/towards_res.pdf

Anderson JJ. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x

Brinck KW. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf

Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3

Lowther AB. Development, expansion, and evaluation of release-recapture survival models for Snake River juvenile salmonids, with new algorithms allowing time-dependent individual covariates. Quantitative Ecology and Resource Management. 2002 ;Ph.D.

Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2

Ryding KE. Estimation of demographic parameters used in assessing wildlife population trends. Quantitative Ecology and Resource Management. 2002 ;Ph.D.

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2001 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2002 . Available from: sites/default/files/papers/PO.2001.pdf

Burgess C, Skalski JR. Evaluation of the 2002 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;X. Available from: sites/default/files/papers/Skalski/ser2vol10FINAL.pdf

Smith SG, Muir WD, Williams JG, Skalski JR. Factors Associated with Travel Time and Survival of Migrant Yearling Chinook Salmon and Steelhead in the Lower Snake River. North American Journal of Fisheries Management [Internet]. 2002 ;22:385-405. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<0385:FAWTTA>2.0.CO;2

Anderson JJ. The Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2002 . Available from: sites/default/files/papers/anderson/flowsurvivalhistory2002.pdf

Hyun S-Y. Inseason Forecasts of Sockeye Salmon Returns to the Bristol Bay Districts of Alaska. [Internet]. 2002 . Available from: sites/default/files/papers/hyun_diss.pdf

Hamel OS, Anderson JJ. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085

Steel AE, Neuhausser S. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from: http://dx.doi.org/10.2307/1468419

Hamel OS. The Dynamics and Effects of Bacterial Kidney Disease in Snake River Spring Chinook Salmon (Oncorhynchus tshawytscha). [Internet]. 2001 . Available from: sites/default/files/papers/Dissertation.pdf

Beer WN, Anderson JJ. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049

Burgess C, Skalski JR. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin, & Combined Wild & Hatchery Salmonids migrating to Rock Island & McNary Dams Using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-5

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2001 . Available from: sites/default/files/papers/PO.2000.pdf

Burgess C, Skalski JR. Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-1

Skalski JR, Ngouenet RF. Evaluation of the compliance testing framework for RPA improvement as stated in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-2

Anderson JJ. History of the Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2001 . Available from: sites/default/files/papers/anderson/flow_survival_history.pdf

Steel AE, Guttorp P, Anderson JJ, Caccia DC. Modeling Juvenile Salmon Migration Using a Simple Markov Chain. Journal of Agricultural, Biological & Environmental Statistics [Internet]. 2001 ;6:80-88. Available from: http://www.jstor.org/stable/1400355

Anderson JJ. Testimony of James J Anderson before the Subcommittee on Water and Power of the U.S. House of Representatives Committee on Resources Held May 19, 2001 in Tacoma, Washington. [Internet]. 2001 . Available from: sites/default/files/papers/anderson/testimonies/house_5_19_2001.pdf

Beer WN, Anderson JJ. Application of the Out-Migrant Survival Simulator (OMSS) using the SWARM modeling environment to study smolt-predator interactions. [Internet]. 2000 . Available from: sites/default/files/papers/swarmfest.pdf

Anderson JJ, Beer WN, Frever T, Hayes JA, Iltis S, Moore MP, Salinger DH, Shaw P, Holmes CV, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000 . Available from: sites/default/files/manuals/crisp16_tc.pdf