Miller TJ. Estimation of catch parameters from a fishery observer program with multiple objectives. Quantitative Ecology and Resource Management. 2005 ;Ph.D.

Griswold J, Townsend RL, Skalski JR. Evaluation of the 2004 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2005 ;XII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-4

Goodwin RA, Nestler JM, Anderson JJ, Kim J, Toney T. Evaluation of Wanapum Dam Bypass Configurations for Outmigrating Juvenile Salmon Using Virtual Fish: Numerical Fish Surrogate (NFS) Analysis. [Internet]. 2005 . Available from: http://el.erdc.usace.army.mil/elpubs/pdf/trel05-7.pdf

Peven C, Giorgi AE, Skalski JR, Langeslay M, Grassell A, Smith SG, Counihan T, Perry R, Bickford S. Guidelines and Suggested Protocols for Conducting, Analyzing, and Reporting Juvenile Salmonid Survival Studies in the Columbia River Basin. [Internet]. 2005 . Available from: sites/default/files/papers/Guidelines_and_Protocols_FINAL_DRAFT.pdf

Anderson JJ, Gurarie E, Zabel RW. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling [Internet]. 2005 ;186:196-211. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.01.014

Buchanan RA. Release-recapture models for migrating juvenile and adult salmon in the Columbia and Snake Rivers using PIT tag and radiotelemetry data. Quantitative Ecology and Resource Management. 2005 ;Ph.D.

Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n4autumn.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n3summer.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2005. [Internet]. 2005 . Available from: sites/default/files/newsletter/newsletter_2005n1winter.pdf

Hyun S-Y, Hilborn R, Anderson JJ, Ernst B. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2005 ;62:1665-1680. Available from: http://dx.doi.org/10.1139/F05-071

Goodwin RA, Anderson JJ, Nestler JM, Liong S-Y, Phoon K-K, Babovic V. Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation. Hydroinformatics [Internet]. 2004 ;1:254-261. Available from: http://dx.doi.org/10.1142/9789812702838_0031

Beer WN, Salinger DH, Iltis S, Anderson JJ. Evaluation of the 2003 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon returning to the Columbia and Snake Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/PO.Adult.2003.pdf

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2003 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2004 . Available from: sites/default/files/papers/PO.2003.pdf

Holmes CV, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model. [Internet]. 2004 . Available from: sites/default/files/papers/2004SummerSpill.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n4autumn.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n2spring.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n3summer.pdf

Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n1winter.pdf

Beer WN, Anderson JJ. Sensitivity of salmon survival to temperature in the mainstem Snake and Columbia Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/beer-anderson2004.pdf

Anderson JJ, Holmes CV. An analysis of smolt survival with implications to flow management. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf

Salinger DH, Rockafellar RT. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Higle JL, Römisch W Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2002 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2003 . Available from: sites/default/files/papers/PO.2002.pdf

Burgess C, Skalski JR. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6

Beer WN, Iltis S, Anderson JJ. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003 . Available from: sites/default/files/papers/temp.exposure.6.pdf

Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5

Holmes CV, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/2003SummerSpill.pdf

Skalski JR. Statistical Framework for Monitoring Basal Area Coverage of Eelgrass in Puget Sound. [Internet]. 2003 . Available from: sites/default/files/papers/Skalski/Skalski 2003 - Stat Framework for Basal Area Coverage of Eelgrass.pdf

Cobleigh MM. Stress, Growth and Survival of Juvenile Chinook Salmon. [Internet]. 2003 . Available from: sites/default/files/papers/cobleigh_thesis.pdf

Beer WN. Total Dissolved Gas submodel parameter calibration for use with CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/gascalibration2003.2.pdf

Anderson JJ. Toward a Resolution of the Flow/Survival Debate and the Impacts of Flow Augmentation and Water Withdrawal in the Columbia/Snake River System. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/towards_res.pdf

Anderson JJ. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x

Brinck KW. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf

Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3

Lowther AB. Development, expansion, and evaluation of release-recapture survival models for Snake River juvenile salmonids, with new algorithms allowing time-dependent individual covariates. Quantitative Ecology and Resource Management. 2002 ;Ph.D.

Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2

Ryding KE. Estimation of demographic parameters used in assessing wildlife population trends. Quantitative Ecology and Resource Management. 2002 ;Ph.D.

Beer WN, Iltis S, Holmes CV, Anderson JJ. Evaluation of the 2001 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2002 . Available from: sites/default/files/papers/PO.2001.pdf

Burgess C, Skalski JR. Evaluation of the 2002 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;X. Available from: sites/default/files/papers/Skalski/ser2vol10FINAL.pdf

Smith SG, Muir WD, Williams JG, Skalski JR. Factors Associated with Travel Time and Survival of Migrant Yearling Chinook Salmon and Steelhead in the Lower Snake River. North American Journal of Fisheries Management [Internet]. 2002 ;22:385-405. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<0385:FAWTTA>2.0.CO;2