Burgess C, Skalski JR. Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-1

Burgess C, Skalski JR. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin, & Combined Wild & Hatchery Salmonids migrating to Rock Island & McNary Dams Using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-5

Burgess C, Skalski JR. Evaluation of the 1999 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2000 ;V. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-4

Beer WN, Hayes JA, Shaw P, Zabel RW, Anderson JJ. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 1999 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02347-1

Burgess C, Townsend RL, Skalski JR. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook and Steelhead, and Hatchery Sockeye in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;IV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-7

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1997 predictions of run-timing of wild migrant yearling and subyearling chinook and sockeye in the Snake River Basin using program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;III. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-6

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Spring/Summer Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1997 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-1

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Subyearling Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1997 ;II. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-2

Hayes JA, Zabel RW, Shaw P, Anderson JJ. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Yearling Chinook at Multiple Locations in the Snake and Columbia River Basins using CRiSP/RealTime. [Internet]. 1996 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P104650

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Subyearling Fall Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1996 ;I. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-12

Townsend RL, Westhagen P, Yasuda D, Skalski JR, Ryding KE. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1996 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-9

Townsend RL, Westhagen P, Yasuda D. Evaluation of the 1994 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin. [Internet]. 1995 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-8

Skalski JR. Evaluation and Recommendations on Alternative Hydroacoustic Array Deployments for the Mouth of the Columbia River to Provide Estimates of Salmonid Smolt Survival and Movements. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2006 ;XX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025091-1

Perry R, Skalski JR. Evaluating Wetland Restoration Projects in the Columbia River Estuary using Hydroacoustic Telemetry Arrays to Estimate Movement, Survival, and Residence Times of Juvenile Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107849

Beer WN, Anderson JJ. Effect of spill on adult salmon passage delay at Columbia River and Snake River dams. [Internet]. 2012 . Available from: sites/default/files/papers/Spill.and.Passage.whitepaper.2012.pdf

Ham KD, Anderson JJ, Vucelick JA. Effect of Multiple Turbine Passage on Juvenile Snake River Salmonid Survival. [Internet]. 2005 . Available from: http://www.pnl.gov/main/publications/external/technical_reports/PNNL-15450.pdf

Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3

Townsend RL, Skalski JR. A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-11

Anderson JJ, Beer WN, Frever T, Hayes JA, Iltis S, Moore MP, Salinger DH, Shaw P, Holmes CV, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000 . Available from: sites/default/files/manuals/crisp16_tc.pdf

Anderson JJ, Hayes JA, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 User manual for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_user.pdf

Anderson JJ, Hayes JA, Shaw P, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 Theory, Calibration and Validation for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_theory.pdf

Norris JG. Chinook Salmon Harvesting Model CRiSP Harvest Manual. [Internet]. 1997 . Available from: sites/default/files/manuals/crisp2_manual.pdf

Beer WN, Anderson JJ. Characteristics of annual water temperature profiles in snowmelt-influenced and rain-dominated watersheds. [Internet]. 2007 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102771

Parsons AL, Skalski JR. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588

Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004

Anderson JJ. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs [Internet]. 2000 ;70:445-470. Available from: http://dx.doi.org/10.1890/0012-9615(2000)070%5B0445:AVBMRS%5D2.0.CO;2

Buchanan RA, Skalski JR. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecological Modelling [Internet]. 2010 ;221:582-589. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2009.11.014

Skalski JR, Smith SG, Iwamoto RN, Williams JG, Hoffmann A. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:1484-1493. Available from: http://dx.doi.org/10.1139/cjfas-55-6-1484

McMichael GA, Skalski JR, Deters KA. Survival of Juvenile Chinook Salmon during Barge Transport. North American Journal of Fisheries Management [Internet]. 2011 ;31:1187-1196. Available from: http://dx.doi.org/10.1080/02755947.2011.646455

Hyun S-Y, Hilborn R, Anderson JJ, Ernst B. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2005 ;62:1665-1680. Available from: http://dx.doi.org/10.1139/F05-071

Perry R, Brandes PL, Burau JR, Klimley PA, MacFarlane B, Michel C, Skalski JR. Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta. Environmental Biology of Fishes. 2013 ;96(2-3):381 - 392.

Beer WN, Anderson JJ. Sensitivity of juvenile salmonid growth to future climate trends. River Research and Applications [Internet]. 2010 . Available from: http://dx.doi.org/10.1002/rra.1390

Skalski JR, Buchanan RA, Griswold J. Review of Marking Methods and Release-Recapture Designs for Estimating the Survival of Very Small Fish: Examples from the Assessment of Salmonid Fry Survival. Reviews in Fisheries Science [Internet]. 2009 ;17:391-401. Available from: http://dx.doi.org/10.1080/10641260902752199

Gosselin JL, Anderson JJ. Resource competition induces heterogeneity and can increase cohort survivorship: selection-event duration matters. Oecologia. 2013 ;173(4):1321-1331.

Hamel OS, Anderson JJ. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085

Parsons AL, Skalski JR. Quantitative Assessment of Salmonid Escapement Techniques. Reviews in Fisheries Science [Internet]. 2010 ;18:301-314. Available from: http://dx.doi.org/10.1080/10641262.2010.513020

Kemp PS, Anderson JJ, Vowles AS. Quantifying behaviour of migratory fish: application of signal detection theory to fisheries engineering. Ecological Engineering [Internet]. 2012 ;41:22-31. Available from: http://dx.doi.org/10.1016/j.ecoleng.2011.12.013

Skalski JR, Liao S, Buchanan RA. Performance of Three Alternative Estimators of Stream Residence Time Based on Live and Dead Counts of Salmonids. North American Journal of Fisheries Management [Internet]. 2010 ;30:191-208. Available from: http://dx.doi.org/10.1577/M08-237.1

Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5

Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056