Publications
2023
Bloomer J, Anderson JJ, Sear D, Greene S, Ganter D, Hanson C. Gastrulation and hatch as critical thermal windows for salmonid embry. River Research and Applications. 2023. Vol. 39 Issue 1 Pages 46-53. Available from: https://doi.org/10.1002/rra.4066
2022
Anderson JJ, Beer WN, Israel JA and Greene S. Targeting river operations to the critical thermal window of fish incubation: Model and case study on Sacramento River winter-run Chinook salmon. River Research and Applications 2022 Vol. 38 Issue 5 Pages 895-905. https://doi.org/10.1002/rra.3965
Anderson JJ, Susser E, Arbeev KG, Yashin AI, Levy D, Verhulst S, et al. Telomere-length dependent T-cell clonal expansion: A model linking ageing to COVID-19 T-cell lymphopenia and mortality. eBioMedicine. 2022. Vol. 78. 10.1016/j.ebiom.2022.103978
Buchanan RA, Whitlock SL. Diagnosing predated tags in telemetry survival studies of migratory fishes in river systems. [Internet]. 2022 ;10(1):13. Available from: https://doi.org/10.1186/s40317-022-00283-1
Gosselin JL, Anderson JJ, Sanderson BL, Middleton MA, Sandford BP, Weitkamp LA. Assessing seasonal and biological indices of juvenile Chinook Salmon for freshwater decision triggers that increase ocean survival. Freshwater Science [Internet]. 2022. Available from: https://www.journals.uchicago.edu/doi/10.1086/720007
2021
Barnard D, Brandes PL, LaPlante D, Nichols K, Holbrook C, Buchanan RA. 2016 South Delta Chinook salmon survival study. Ed. P. Brandes and B. Matthias; 2021.
Buchanan RA, Buttermore E, Israel J. Outmigration Survival of a Threatened Steelhead Population through a Tidal Estuary. Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2021. Available from: https://doi.org/10.1139/cjfas-2020-0467
Buchanan RA. Rare migration strategy key during climate change. Nature Climate Change [Internet]. 2021 ;11(11):906 - 907. Available from: https://www.nature.com/articles/s41558-021-01192-6
Gosselin JL, Buhle ER, VanHolmes C, Beer WN, Iltis S, Anderson JJ. Role of carryover effects in conservation of wild Pacific salmon migrating regulated rivers. Ecosphere [Internet]. 2021 ;12(7). Available from: https://doi.org/10.1002/ecs2.3618
Gosselin JL. Shifting signals: Correlations Among Freshwater, Marine and Climatic Indices Important for Migratory Animal Studies Crozier LG, Burke BJ. Ecological Indicators. 2021 ;121.
Holbrook C, Towne K, Brandes PL, Nichols K, Buchanan RA, Ammann A, Singer G, Chapman E. 2017 South Delta Chinook salmon survival study. Ed. P. Brandes, G. Castillo, and B. Matthias; 2021.
Townsend RL, Skalski J, Buchanan RA, Lady J. Evaluation of the 2021 predictions of the run-timing of wild and hatchery-reared salmon and steelhead smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams Using Program RealTime. Monitoring and evaluation of smolt migration in the Columbia Basin Volume XXXIII; 2021.
2020
Buchanan RA, Skalski JR. Relating survival of fall-run Chinook Salmon through the San Joaquin delta to river flow. Environmental Biology of Fishes. 2020 ;103:389-410.
Gosselin JL, Anderson JJ. Step-patterned survivorship curves: Mortality and loss of equilibrium responses to high temperature and food restriction in juvenile rainbow trout (Oncorhynchus mykiss). PLoS ONE. 2020 ;15(5).
Hess JE, Smith JJ, Timoshevskaya N, Baker C, Caudill CC, Graves D, Keefer ML, Kinziger AP, Moser ML, Porter LL, et al. Genomic islands of divergence infer a phenotypic landscape in Pacific lamprey. Molecular Ecology [Internet]. 2020 ;29(20):3841 - 3856. Available from: https://onlinelibrary.wiley.com/toc/1365294x/29/20
Litzow MA. Quantifying a Novel Climate Through Changes in PDO-Climate and PDO-Salmon Relationships Gosselin JL. Geophysical Research Letters. 2020 ;47.
Litzow MA. The changing physical and ecological meanings of North Pacific Ocean climate indices Gosselin JL. Proceedings of the National Academy of Sciences. 2020 ;117:7665-7671.
Munsch SH. Potential for ecological nonlinearities and thresholds to inform Pacific salmon management Gosselin JL. Ecosphere. 2020 ;11(12).
Skalski JR, Whitlock SL. Vitality models found useful in modeling tag-failure times in acoustic-tag survival studies. [Internet]. 2020 ;8(1):26. Available from: https://doi.org/10.1186/s40317-020-00213-z
Skalski JR, Whitlock SL, Townsend RL, Harnish RA. Passage and Survival of Juvenile Salmonid Smolts through Dams in the Columbia and Snake Rivers, 2010–2018. North American Journal of Fisheries Management [Internet]. 2020. Available from: https://doi.org/10.1002/nafm.10572
Whitlock SL, Lewis TM, Peterson JT. Using a Bayesian Multistate Occupancy Model to Assess Seabird and Shorebird Status in Glacier Bay, Alaska. Wildlife Society Bulletin [Internet]. 2020 ;44(3):451 - 467. Available from: https://onlinelibrary.wiley.com/toc
Whitlock SL, Womble JN, Peterson JT. Modelling pinniped abundance and distribution by combining counts at terrestrial sites and in-water sightings. Ecological Modelling [Internet]. 2020 ;420:108965. Available from: https://linkinghub.elsevier.com/retrieve/pii/S0304380020300375
VanHolmes C, Gosselin JL. Development of a Mean Annual Temperature Value for the Continued Calculation of the Pacific Northwest Climate Index. Seattle: Columbia Basin Research, University of Washington; 2020. Available from: sites/default/files/papers/Olga_Surrogate_DFA_FINAL.pdf
2019
Duarte A, Whitlock SL, Peterson JT. Encyclopedia of EcologySpecies Distribution Modeling. Elsevier; 2019 pp. 189 - 198. Available from: https://linkinghub.elsevier.com/retrieve/pii/B978012409548910572X
Satterthwaite WH. Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks Gosselin JL. ICES Journal of Marine Science. 2019 ;77:1503-1515.
2018
Beer WN, Steel AE. Impacts and Implications of Temperature Variability on Chinook Salmon Egg Development and Emergence Phenology. Transactions of the American Fisheries Society [Internet]. 2018 ;147(1):3 - 15. Available from: https://onlinelibrary.wiley.com/doi/10.1002/tafs.10025
Buchanan RA. 2014 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic & Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2014 FINAL.PDF
Buchanan RA. 2015 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic and Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2015 FINAL.pdf
Buchanan RA. 2016 Six-Year Acoustic Telemetry Steelhead Study: Statistical Methods and Results. Seattle: Columbia Basin Research, School of Aquatic and Fishery Sciences, University of Washington; 2018. Available from: sites/default/files/papers/UW 6yr steelhead report 2016 FINAL.pdf
Buchanan RA, Barnard D, Brandes PL, Towne K, Ingram J, Nichols K, Israel J. 2015 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 208. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
Buchanan RA, Brandes PL, Ingram J, Marshall M, Nichols K, LaPlante D, Barnard D, Towne K, Israel J. 2014 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 228. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
Buchanan RA, Brandes PL, Marshall M, Nichols K, Ingram J, LaPlante D, Israel J. 2013 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2018 p. 139. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
Buchanan RA, Brandes PL, Skalski JR. Survival of Juvenile Fall‐Run Chinook Salmon through the San Joaquin River Delta, California, 2010–2015. North American Journal of Fisheries Management. 2018 ;38(3):663-679.
Gosselin JL. Conservation planning for freshwater-marine carryover effects on Chinook salmon survival Zabel RW, Anderson JJ, Faulkner JR, Baptista AM, Sandford BP. Ecology and Evolution. 2018 ;3:319-332.
Gosselin JL. Snake River Juvenile Salmon and Steelhead Transportation Synthesis Report VanHolmes C, Iltis S, Anderson JJ. [Internet]. 2018. Available from: sites/default/files/papers/Transportation Synthesis Report FINAL 2018-04-03.pdf
Gosselin JL. Snake River Juvenile Salmon and Steelhead Transportation Synthesis Report, Appendix: References with abstracts and summaries VanHolmes C, Iltis S, Anderson JJ. [Internet]. 2018. Available from: sites/default/files/papers/Transportation Synthesis - Appendix - Abstracts - 180403.pdf
Whitlock SL, Campbell MR, Quist MC, Dux AM. Using Genetic and Phenotypic Comparisons to Evaluate Apparent Segregation among Kokanee Spawning Groups. Transactions of the American Fisheries Society [Internet]. 2018 ;147(1):43 - 60. Available from: https://onlinelibrary.wiley.com/doi/10.1002/tafs.10017
Whitlock SL, Quist MC, Dux AM. Effects of Water-Level Management and Hatchery Supplementation on Kokanee Recruitment in Lake Pend Oreille, Idaho. Northwest Science [Internet]. 2018 ;92(2):136 - 148. Available from: http://www.bioone.org/doi/10.3955/046.092.0206
2017
Gosselin JL, Anderson JJ. Combining Migration History, River Conditions, and Fish Condition to Examine Cross-Life-Stage Effects on Marine Survival in Chinook Salmon. Transactions of the American Fisheries Society. 2017 ;146(3):408-421.
Schultz LD, Chasco BE, Whitlock SL, Meeuwig MH, Schreck CB. Growth and annual survival estimates to examine the ecology of larval lamprey and the implications of ageing error in fitting models. Journal of Fish Biology [Internet]. 2017 ;90(4):1305 - 1320. Available from: http://doi.wiley.com/10.1111/jfb.2017.90.issue-4
Whitlock SL, Schultz LD, Schreck CB, Hess JE. Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey ( Entosphenus tridentatus ). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2017 ;74(10):1646 - 1653. Available from: http://www.nrcresearchpress.com/doi/10.1139/cjfas-2016-0154
2016
Dietrich J, Eder K, Thompson D, Buchanan RA, Skalski J, McMichael G, Fryer D, Loge F. Survival and transit of in-river and transported yearling Chinook salmon in the lower Columbia River and estuary. [Internet]. 2016 ;183:435 - 446. Available from: https://www.sciencedirect.com/science/article/pii/S0165783616302181
Perry RW, Buchanan RA, Brandes PL, Burau J, Israel JA. Anadromous salmonids in the delta: new science 2006–2016. San Francisco Estuary and Watershed Science [Internet]. 2016 ;14(2). Available from: https://escholarship.org/uc/item/27f0s5kh
Pope AC, Lockhart T, Buchanan RA. Generation of multistate release–recapture models using a graphic user interface (GUI). [Internet]. 2016 ;4(1):23. Available from: https://doi.org/10.1186/s40317-016-0115-6
Schultz LD, Mayfield MP, Sheoships GT, Wyss LA, Clemens BJ, Whitlock SL, Schreck CB. Role of large- and fine-scale variables in predicting catch rates of larval Pacific lamprey in the Willamette Basin, Oregon. Ecology of Freshwater Fish [Internet]. 2016 ;25(2):261 - 271. Available from: http://doi.wiley.com/10.1111/eff.2016.25.issue-2
Schultz LD, Mayfield MP, Whitlock SL. Sample Sizes Needed to Describe Length-Frequency of Small-Bodied Fishes: An Example Using Larval Pacific LampreyAbstract. Journal of Fish and Wildlife Management [Internet]. 2016 ;7(2):315 - 322. Available from: https://meridian.allenpress.com/jfwm/article/7/2/315/209666/Sample-Sizes-Needed-to-Describe-Length-Frequency
2015
Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2014. [Internet]. 2015. Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148590
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2014 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tshawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2015. Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148589
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2014 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2015. Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148588
Buchanan RA, Brandes PL, Marshall M, J. Foott S, Ingram J, LaPlante D, Israel J. 2012 South Delta Chinook Salmon Survival Study. Lodi: U.S. Fish & Wildlife Service, Lodi Fish & Wildlife Office; 2015 p. 145. Available from: https://www.fws.gov/lodi/salmonid_survival_studies/juvenile_salmonid_survival_reports.htm
Buchanan RA, Mackey G, Snow C, Murdoch AR. Estimating Cohort Survival through Tributaries for Salmonid Populations with Variable Ages at Migration. North American Journal of Fisheries ManagementNorth American Journal of Fisheries Management [Internet]. 2015 ;35(5):958 - 973. Available from: https://doi.org/10.1080/02755947.2015.1064837
Whitlock SL, Quist MC, Dux AM. Incubation success and habitat selection of shore-spawning kokanee Oncorhynchus nerka : effects of water-level regulation and habitat characteristics. Ecology of Freshwater Fish [Internet]. 2015 ;24(3):412 - 423. Available from: http://doi.wiley.com/10.1111/eff.2015.24.issue-3
2014
Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2013. [Internet]. 2014. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137744
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2013 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2014. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137743
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2013 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2014. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137742
Whitlock SL, Quist MC, Dux AM. Influence of Habitat Characteristics on Shore-Spawning Kokanee. Transactions of the American Fisheries Society [Internet]. 2014 ;143(6):1404 - 1418. Available from: http://doi.wiley.com/10.1080/00028487.2014.931302
2013
Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2012. [Internet]. 2013. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132731
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2012 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2013. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132681
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2012 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2013. Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132683
Buchanan RA, Skalski J, Brandes PL, Fuller A. Route Use and Survival of Juvenile Chinook Salmon through the San Joaquin River Delta. North American Journal of Fisheries ManagementNorth American Journal of Fisheries Management [Internet]. 2013 ;33(1):216 - 229. Available from: https://doi.org/10.1080/02755947.2012.728178
Gosselin JL, Anderson JJ. Resource competition induces heterogeneity and can increase cohort survivorship: selection-event duration matters. Oecologia. 2013 ;173(4):1321-1331.
Perry R, Brandes PL, Burau JR, Klimley PA, MacFarlane B, Michel C, Skalski JR. Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta. Environmental Biology of Fishes. 2013 ;96(2-3):381 - 392.
Skalski J, Seaburg AG, Buchanan RA. The effects of high detection probabilities on model selection in paired release-recapture studies in the era of electronic tagging studies. [Internet]. 2013 ;1(1):12. Available from: https://doi.org/10.1186/2050-3385-1-12
2012
Anderson JJ, Gosselin JL, Ham KD. Snake River Basin Differential Delayed Mortality Synthesis: Appendix A References, Abstracts, and Executive Summaries of Research Related to Differential Delayed Mortality. [Internet]. 2012. Available from: sites/default/files/papers/PNWD-4283_Differential_Delayed_Mortality_Final_Report_Appendices.pdf
Anderson JJ, Gosselin JL, Ham KD. Snake River Basin Differential Delayed Mortality Synthesis: Final Report. [Internet]. 2012. Available from: sites/default/files/papers/PNWD-4283_Differential_Delayed_Mortality_Final_Report.pdf
Anon. Sustainable Water and Environmental Management in the California Bay-Delta. The National Academies Press; 2012 p. 280. Available from: http://www.nap.edu/openbook.php?record_id=13394
Beer WN, Anderson JJ. Effect of spill on adult salmon passage delay at Columbia River and Snake River dams. [Internet]. 2012. Available from: sites/default/files/papers/Spill.and.Passage.whitepaper.2012.pdf
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2011 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2012. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P127362
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2011 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2012. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P126069
Bracis C, Anderson JJ. An investigation of the geomagnetic imprinting hypothesis for salmon. Fisheries Oceanography [Internet]. 2012 ;21:170-181. Available from: http://dx.doi.org/10.1111/j.1365-2419.2012.00617.x
Enders EC, Gessel MH, Anderson JJ, Williams JG. Effects of Decelerating and Accelerating Flows on Juvenile Salmonid Behavior. Transactions of the American Fisheries Society [Internet]. 2012 ;141(2):357-364. Available from: http://dx.doi.org/10.1080/00028487.2012.664604
Kemp PS, Anderson JJ, Vowles AS. Quantifying behaviour of migratory fish: application of signal detection theory to fisheries engineering. Ecological Engineering [Internet]. 2012 ;41:22-31. Available from: http://dx.doi.org/10.1016/j.ecoleng.2011.12.013
Passolt G. A Predator Susceptibility Model of Juvenile Salmon Survival and a Voronoi Tessellation-based Approach for Generating Hypothetical Forest Landscapes. [Internet]. 2012. Available from: sites/default/files/papers/Passoltmasters.pdf
Skalski JR, Steig TW, Hemstrom S. Assessing compliance with fish survival standards: a case study at Rock Island Dam, Washington. Environmental Science & Policy [Internet]. 2012 ;18:45-51. Available from: http://dx.doi.org/10.1016/j.envsci.2012.01.001
Widener D. Migration and bioenergetics of juvenile Snake River fall Chinook salmon. [Internet]. 2012. Available from: sites/default/files/papers/widener_thesis.pdf
2011
Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2010. [Internet]. 2011. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121106
Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2011. [Internet]. 2011. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P126070
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2010 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2011. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121108
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2010 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2011. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121107
Gast CM. Fixed and random effects models and multistate estimation procedures for statistical population reconstructions. Quantitative Ecology and Resource Management. 2011 ;Ph.D.
Gosselin JL. Cumulative Experiences and Heterogeneity Affect Fish Survival:Examples from a model species (Poecilia reticulata) and salmonid species (Oncorhynchus spp.). School of Aquatic and Fishery Sciences [Internet]. 2011 ;Doctor of Philosophy:211. Available from: sites/default/files/papers/GosselinDissertation.pdf
Li T. Visualize the Intrinsic and Extrinsic Processes that Determine the Patterns of Human Mortality. [Internet]. 2011. Available from: sites/default/files/papers/li_ting_dissertation.pdf
McMichael GA, Skalski JR, Deters KA. Survival of Juvenile Chinook Salmon during Barge Transport. North American Journal of Fisheries Management [Internet]. 2011 ;31:1187-1196. Available from: http://dx.doi.org/10.1080/02755947.2011.646455
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2010 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. [Internet]. 2011. Available from: sites/default/files/papers/Skalski/M&E Volume XX (2010 RealTime Report).pdf
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2011 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. [Internet]. 2011. Available from: sites/default/files/papers/Skalski/M&E Volume XXI (2011 RealTime Report).pdf
2010
Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2009. [Internet]. 2010. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116033
Beer WN, Anderson JJ. Sensitivity of juvenile salmonid growth to future climate trends. River Research and Applications [Internet]. 2010. Available from: http://dx.doi.org/10.1002/rra.1390
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2009 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2010. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116012
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2009 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2010. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116013
Bracis C. A model of the ocean migration of Pacific salmon. [Internet]. 2010. Available from: sites/default/files/papers/BracisThesis.pdf
Buchanan RA, Skalski JR. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecological Modelling [Internet]. 2010 ;221:582-589. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2009.11.014
Buchanan RA, Skalski JR, Giorgi AE. Evaluating Surrogacy of Hatchery Releases for the Performance of Wild Yearling Chinook Salmon from the Snake River Basin. North American Journal of Fisheries Management [Internet]. 2010 ;30:1258–1269. Available from: http://dx.doi.org/10.1577/M09-175.1
Clawson MV. Use of age-at-harvest information to inform wildlife management. School of Forest Resources. 2010 ;M.S.
Parsons AL, Skalski JR. Quantitative Assessment of Salmonid Escapement Techniques. Reviews in Fisheries Science [Internet]. 2010 ;18:301-314. Available from: http://dx.doi.org/10.1080/10641262.2010.513020
Perry R. Survival and migration dynamics of juvenile Chinook salmon (Oncorhynchus tshawytscha ) in the Sacramento-San Joaquin River Delta. School of Aquatic & Fishery Sciences. 2010 ;Ph.D.
Skalski JR, Liao S, Buchanan RA. Performance of Three Alternative Estimators of Stream Residence Time Based on Live and Dead Counts of Salmonids. North American Journal of Fisheries Management [Internet]. 2010 ;30:191-208. Available from: http://dx.doi.org/10.1577/M08-237.1
Skalski JR, Townsend RL, Steig TW, Hemstrom S. Comparison of Two Alternative Approaches for Estimating Dam Passage Survival of Salmon Smolts. North American Journal of Fisheries Management [Internet]. 2010 ;30:831-839. Available from: http://dx.doi.org/10.1577/M09-103.1
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2009 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2010 ;XIX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P115115
2009
Anderson JJ, Beer WN. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications [Internet]. 2009 ;19:1989-2003. Available from: http://dx.doi.org/10.1890/08-0477.1
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2009. [Internet]. 2009. Available from: sites/default/files/newsletter/salmoninsider_2009n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2009. [Internet]. 2009. Available from: sites/default/files/newsletter/salmoninsider_2009n3summer.pdf
Beer WN, Anderson JJ. Predicting and Monitoring Spring Chinook Salmon Migrations on the Columbia River. [Internet]. 2009. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111392
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2009. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111391
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2009. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P109799
Buchanan RA, Skalski J, McMichael GA. Differentiating mortality from delayed migration in subyearling fall Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2009 ;66(12):2243 - 2255. Available from: https://doi.org/10.1139/F09-154
Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004
Parsons AL, Skalski JR. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588
Parsons AL, Skalski JR. A Statistical Critique of Estimating Salmon Escapement in the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXIV. Available from: sites/default/files/papers/Skalski/D&A Volume 24 (Salmon Escapement).pdf
Skalski JR, Buchanan RA, Townsend RL, Steig TW, Hemstrom S. A Multiple-Release Model to Estimate Route-Specific and Dam Passage Survival at a Hydroelectric Project. North American Journal of Fisheries Management [Internet]. 2009 ;29:670-679. Available from: http://dx.doi.org/10.1577/M07-227.1
Skalski JR, Buchanan RA, Griswold J. Review of Marking Methods and Release-Recapture Designs for Estimating the Survival of Very Small Fish: Examples from the Assessment of Salmonid Fry Survival. Reviews in Fisheries Science [Internet]. 2009 ;17:391-401. Available from: http://dx.doi.org/10.1080/10641260902752199
Stover A. Estimating Pacific Northwest salmon escapement: A methods review based on statistical first principles. Quantitative Ecology and Resource Management. 2009 ;M.S.
2008
Anderson JJ. Characterizing System Failure Curves with Vitality. Army Science Conference, 26th [Internet]. 2008. Available from: sites/default/files/papers/anderson/2008_army26thscienceconf.pdf
Anderson JJ, Gildea MC, Williams DW, Li T. Linking growth, survival and heterogeneity through vitality. American Naturalist [Internet]. 2008 ;171:E20-E43. Available from: http://dx.doi.org/10.1086/524199
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2008. [Internet]. 2008. Available from: sites/default/files/newsletter/salmoninsider_2008n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2008. [Internet]. 2008. Available from: sites/default/files/newsletter/salmoninsider_2008n3summer.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2008. [Internet]. 2008. Available from: sites/default/files/newsletter/newsletter_2008n1winter.pdf
Ashbrook CE. Selective fishing and its impacts on salmon: a tale of two test fisheries. School of Aquatic & Fishery Sciences. 2008 ;M.S.
Beer WN. Stock Separation of Chinook salmon at Bonneville Dam for Adult Upstream Migration Model (2008). [Internet]. 2008. Available from: sites/default/files/papers/StockSeparationforAUM2008.pdf
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2007 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2008. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107213
Broms K. Small game population reconstruction: Model development and application. Quantitative Ecology and Resource Management. 2008 ;M.S.
Gurarie E. Models and analysis of animal movements: From individual tracks to mass dispersal. [Internet]. 2008. Available from: http://wiki.cbr.washington.edu/qerm/sites/qerm/images/9/9f/GurarieDissertationFinalDraft.pdf
Li T. Extension of the Vitality Model and Its Application. [Internet]. 2008. Available from: sites/default/files/papers/li_ting_thesis.pdf
Perry R, Skalski JR. Effects of Array Configuration on Statistical Independence of Replicated Telemetry Arrays used in Smolt Survival Studies. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXIII. Available from: sites/default/files/papers/Skalski/D&A Volume 23 (Independence of Replicated Arrays).pdf
Perry R, Skalski JR. Evaluating Wetland Restoration Projects in the Columbia River Estuary using Hydroacoustic Telemetry Arrays to Estimate Movement, Survival, and Residence Times of Juvenile Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107849
Nestler JM, Goodwin RA, Smith DL, Anderson JJ. Mathematical & Conceptual Framework for the New Discipline of Ecohydraulics. In: Wood P, Hannah D, Sadler J Hydroecology and Ecohydrology: Past, Present and Future. Hydroecology and Ecohydrology: Past, Present and Future. New York: Wiley; 2008. pp. 205-224.
Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2008 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime. [Internet]. 2008. Available from: sites/default/files/papers/Skalski/M&E Volume XVII (2008 RealTime Report).pdf
Zabel RW, Faulkner J, Smith SG, Anderson JJ, VanHolmes C, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from: http://dx.doi.org/10.1007/s10750-008-9407-z
2007
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2007. [Internet]. 2007. Available from: sites/default/files/newsletter/newsletter_2007n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2007. [Internet]. 2007. Available from: sites/default/files/newsletter/newsletter_2007n3summer.pdf
Beer WN. Run timing of adult Chinook salmon passing Bonneville dam on the Columbia River. [Internet]. 2007. Available from: sites/default/files/papers/chinook.run.timing.2007.pdf
Beer WN, Anderson JJ. Characteristics of annual water temperature profiles in snowmelt-influenced and rain-dominated watersheds. [Internet]. 2007. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102771
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2006 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2007. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102789
Buchanan RA, Conquest LL. How many does it pay to rank? Linear and quadratic cost models to estimate a population mean. Journal of Statistical Theory and Applications. 2007 ;6.
Buchanan RA, Skalski JR. A Migratory Life-Cycle Release-Recapture Model for Salmonid PIT-Tag Investigations. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2007 ;12:325-345. Available from: http://dx.doi.org/10.1198/108571107X229331
Goodwin RA, Nestler JM, Anderson JJ, Weber LJ. A New Tool to Forecast Fish Movement and Passage. Hydro Review [Internet]. 2007 ;26:58-71. Available from: http://www.hydroworld.com/index/display/article-display/354303/articles/hydro-review/volume-26/issue-4/technical-articles/a-new-tool-to-forecast-fish-movement-and-passage.html
Lindley ST, Schick RS, Mora E, Adams PB, Anderson JJ, Greene S, Hanson C, May BP, McEwan D, MacFarlane B, et al. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science [Internet]. 2007 ;5. Available from: http://escholarship.org/uc/item/3653x9xc
Skalski J, Millspaugh JJ, Dillingham P, Buchanan RA. Calculating the variance of the finite rate of population change from a matrix model in Mathematica. Special section: Advanced Technology for Environmental Modelling [Internet]. 2007 ;22(3):359 - 364. Available from: https://www.sciencedirect.com/science/article/pii/S1364815206000028
Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2006 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt at Rock Island, Lower Granite, McNary, John Day and Bonneville Dams using Program Real Time. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2007 ;XIV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025093-2
VanHolmes C. Mean Spring and Fall Upwelling Transition Dates off the Oregon and Washington Coasts. [Internet]. 2007. Available from: sites/default/files/papers/trans.cbrmean.pdf
2006
Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2006. [Internet]. 2006. Available from: sites/default/files/newsletter/newsletter_2006n4autumn.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2006. [Internet]. 2006. Available from: sites/default/files/newsletter/newsletter_2006n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2006. [Internet]. 2006. Available from: sites/default/files/newsletter/newsletter_2006n3summer.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2006. [Internet]. 2006. Available from: sites/default/files/newsletter/newsletter_2006n1winter.pdf
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2005 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) returning to the Columbia and Snake Rivers. [Internet]. 2006. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025162-3
Beer WN, Iltis S, Anderson JJ. Evaluation of the 2005 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2006. Available from: sites/default/files/papers/PO.2005.pdf
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2004 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2006. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00005396-2
Beer WN, Salinger DH, Iltis S, Anderson JJ. Evaluation of the 2004 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) returning to the Columbia and Snake Rivers. [Internet]. 2006. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00020638-2
Buchanan RA, Skalski JR, Smith SG. Estimating the Effects of Smolt Transportation from Different Vantage Points and Management Perspectives. North American Journal of Fisheries Management [Internet]. 2006 ;26:460-472. Available from: http://dx.doi.org/10.1577/M05-080.1
Goodwin RA, Nestler JM, Anderson JJ, Weber LJ, Loucks DP. Forecasting 3-D fish movement behavior using a Eulerian-Lagrangian-agent method (ELAM). Ecological Modelling [Internet]. 2006 ;192:197-223. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.08.004
Griswold J, Townsend RL, Skalski JR. Evaluation of the 2005 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2006 ;XIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-5
Gurarie E. Preliminary analysis of hydroacoustically tagged salmon smolt survival and migration rates in the mid-Columbia River. [Internet]. 2006. Available from: sites/default/files/papers/HTIanalysis_Gurarie2006.pdf
Lindley ST, Schick RS, Agrawal A, Goslin M, Pearson TE, Mora E, Anderson JJ, May BP, Greene S, Hanson C, et al. Historical population structure of Central Valley steelhead and its alteration by dams. San Francisco Estuary and Watershed Science [Internet]. 2006 ;4. Available from: http://escholarship.org/uc/item/1ss794fc
Salinger DH, Anderson JJ. Effects of Water Temperature and Flow on Adult Salmon Migration Swim Speed and Delay. Transactions of the American Fisheries Society [Internet]. 2006 ;135:188-199. Available from: http://dx.doi.org/10.1577/T04-181.1
Skalski JR. Evaluation and Recommendations on Alternative Hydroacoustic Array Deployments for the Mouth of the Columbia River to Provide Estimates of Salmonid Smolt Survival and Movements. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2006 ;XX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025091-1
Skalski JR, Griswold J. A Summary of Methods for Conducting Salmonid Fry Mark-Recapture Studies for Estimating Survival in Tributaries. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2006 ;XXI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025091-2
Steele-Feldman AM. Learning and animal behavior: exploring the dynamics of simple models. [Internet]. 2006. Available from: sites/default/files/papers/steele-feldman_thesis.pdf
Townsend RL, Skalski JR, Dillingham P, Steig TW. Correcting Bias in Survival Estimation Resulting From Tag Failure in Acoustic and Radiotelemetry Studies. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2006 ;11:183-196. Available from: http://dx.doi.org/10.1198/108571106X111323
Weber LJ, Goodwin RA, Li S, Nestler JM, Anderson JJ. Application of an Eulerian-Lagrangian-Agent method (ELAM) to rank alternative designs of a juvenile fish passage facility. J. Hydroinformatics [Internet]. 2006 ;8:271-295. Available from: http://dx.doi.org/10.2166/hydro.2006.006
2005
Anderson JJ, Gurarie E, Zabel RW. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling [Internet]. 2005 ;186:196-211. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.01.014
Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2005. [Internet]. 2005. Available from: sites/default/files/newsletter/newsletter_2005n4autumn.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2005. [Internet]. 2005. Available from: sites/default/files/newsletter/newsletter_2005n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2005. [Internet]. 2005. Available from: sites/default/files/newsletter/newsletter_2005n3summer.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2005. [Internet]. 2005. Available from: sites/default/files/newsletter/newsletter_2005n1winter.pdf
Buchanan RA. Release-recapture models for migrating juvenile and adult salmon in the Columbia and Snake Rivers using PIT tag and radiotelemetry data. Quantitative Ecology and Resource Management. 2005 ;Ph.D.
Buchanan RA, Conquest LL, Courbois J-P. A cost analysis of ranked set sampling to estimate a population mean. Environmetrics. 2005 ;16.
Goodwin RA, Nestler JM, Anderson JJ, Kim J, Toney T. Evaluation of Wanapum Dam Bypass Configurations for Outmigrating Juvenile Salmon Using Virtual Fish: Numerical Fish Surrogate (NFS) Analysis. [Internet]. 2005. Available from: http://el.erdc.usace.army.mil/elpubs/pdf/trel05-7.pdf
Griswold J, Townsend RL, Skalski JR. Evaluation of the 2004 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2005 ;XII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-4
Ham KD, Anderson JJ, Vucelick JA. Effect of Multiple Turbine Passage on Juvenile Snake River Salmonid Survival. [Internet]. 2005. Available from: http://www.pnl.gov/main/publications/external/technical_reports/PNNL-15450.pdf
Hyun S-Y, Hilborn R, Anderson JJ, Ernst B. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2005 ;62:1665-1680. Available from: http://dx.doi.org/10.1139/F05-071
Miller TJ. Estimation of catch parameters from a fishery observer program with multiple objectives. Quantitative Ecology and Resource Management. 2005 ;Ph.D.
Peven C, Giorgi AE, Skalski JR, Langeslay M, Grassell A, Smith SG, Counihan T, Perry R, Bickford S. Guidelines and Suggested Protocols for Conducting, Analyzing, and Reporting Juvenile Salmonid Survival Studies in the Columbia River Basin. [Internet]. 2005. Available from: sites/default/files/papers/Guidelines_and_Protocols_FINAL_DRAFT.pdf
Skalski JR, and RL Townsend. 2005. Pacific Northwest Hatcheries Smolt-to-Adult Ratio (SAR) Estimation using Coded Wire Tags (CWT) Data. Technical Report to Bonneville Power Administration, Project No. 1991-051-00, Contract No. 00013690.
Springman KR, Kurath G, Anderson JJ, Emlen JM. Contaminants as viral cofactors: assessing indirect population effects. Aquatic Toxicology [Internet]. 2005 ;71:13-23. Available from: http://dx.doi.org/10.1016/j.aquatox.2004.10.006
2004
Anon. Salmon Insider Columbia Basin Research Newsletter Autumn 2004. [Internet]. 2004. Available from: sites/default/files/newsletter/newsletter_2004n4autumn.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Spring 2004. [Internet]. 2004. Available from: sites/default/files/newsletter/newsletter_2004n2spring.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Summer 2004. [Internet]. 2004. Available from: sites/default/files/newsletter/newsletter_2004n3summer.pdf
Anon. Salmon Insider Columbia Basin Research Newsletter Winter 2004. [Internet]. 2004. Available from: sites/default/files/newsletter/newsletter_2004n1winter.pdf
Beer WN, Anderson JJ. Sensitivity of salmon survival to temperature in the mainstem Snake and Columbia Rivers. [Internet]. 2004. Available from: sites/default/files/papers/beer-anderson2004.pdf
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2003 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2004. Available from: sites/default/files/papers/PO.2003.pdf
Beer WN, Salinger DH, Iltis S, Anderson JJ. Evaluation of the 2003 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon returning to the Columbia and Snake Rivers. [Internet]. 2004. Available from: sites/default/files/papers/PO.Adult.2003.pdf
Goodwin RA, Anderson JJ, Nestler JM, Liong S-Y, Phoon K-K, Babovic V. Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation. Hydroinformatics [Internet]. 2004 ;1:254-261. Available from: http://dx.doi.org/10.1142/9789812702838_0031
VanHolmes C, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model. [Internet]. 2004. Available from: sites/default/files/papers/2004SummerSpill.pdf
2003
Anderson JJ. Toward a Resolution of the Flow/Survival Debate and the Impacts of Flow Augmentation and Water Withdrawal in the Columbia/Snake River System. [Internet]. 2003. Available from: sites/default/files/papers/anderson/towards_res.pdf
Anderson JJ, VanHolmes C. An analysis of smolt survival with implications to flow management. [Internet]. 2003. Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf
Beer WN. Total Dissolved Gas submodel parameter calibration for use with CRiSP. [Internet]. 2003. Available from: sites/default/files/papers/gascalibration2003.2.pdf
Beer WN, Iltis S, Anderson JJ. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003. Available from: sites/default/files/papers/temp.exposure.6.pdf
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2002 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2003. Available from: sites/default/files/papers/PO.2002.pdf
Burgess C, Skalski JR. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6
Cobleigh MM. Stress, Growth and Survival of Juvenile Chinook Salmon. [Internet]. 2003. Available from: sites/default/files/papers/cobleigh_thesis.pdf
Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5
Salinger DH, Rockafellar RT. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Higle JL, Römisch W Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960
Skalski JR. Statistical Framework for Monitoring Basal Area Coverage of Eelgrass in Puget Sound. [Internet]. 2003. Available from: sites/default/files/papers/Skalski/Skalski 2003 - Stat Framework for Basal Area Coverage of Eelgrass.pdf
VanHolmes C, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003. Available from: sites/default/files/papers/2003SummerSpill.pdf
2002
Anderson JJ. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x
Anderson JJ. The Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2002. Available from: sites/default/files/papers/anderson/flowsurvivalhistory2002.pdf
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2001 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2002. Available from: sites/default/files/papers/PO.2001.pdf
Brinck KW. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002. Available from: sites/default/files/papers/Brinckthesis.pdf
Burgess C, Skalski JR. Evaluation of the 2002 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;X. Available from: sites/default/files/papers/Skalski/ser2vol10FINAL.pdf
Hamel OS, Anderson JJ. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085
Hyun S-Y. Inseason Forecasts of Sockeye Salmon Returns to the Bristol Bay Districts of Alaska. [Internet]. 2002. Available from: sites/default/files/papers/hyun_diss.pdf
Lowther AB. Development, expansion, and evaluation of release-recapture survival models for Snake River juvenile salmonids, with new algorithms allowing time-dependent individual covariates. Quantitative Ecology and Resource Management. 2002 ;Ph.D.
Ryding KE. Estimation of demographic parameters used in assessing wildlife population trends. Quantitative Ecology and Resource Management. 2002 ;Ph.D.
Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2
Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3
Smith SG, Muir WD, Williams JG, Skalski JR. Factors Associated with Travel Time and Survival of Migrant Yearling Chinook Salmon and Steelhead in the Lower Snake River. North American Journal of Fisheries Management [Internet]. 2002 ;22:385-405. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<0385:FAWTTA>2.0.CO;2
2001
Anderson JJ. History of the Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2001. Available from: sites/default/files/papers/anderson/flow_survival_history.pdf
Anderson JJ. Testimony of James J Anderson before the Subcommittee on Water and Power of the U.S. House of Representatives Committee on Resources Held May 19, 2001 in Tacoma, Washington. [Internet]. 2001. Available from: sites/default/files/papers/anderson/testimonies/house_5_19_2001.pdf
Beer WN, Anderson JJ. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2001. Available from: sites/default/files/papers/PO.2000.pdf
Burgess C, Skalski JR. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin, & Combined Wild & Hatchery Salmonids migrating to Rock Island & McNary Dams Using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-5
Burgess C, Skalski JR. Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-1
Hamel OS. The Dynamics and Effects of Bacterial Kidney Disease in Snake River Spring Chinook Salmon (Oncorhynchus tshawytscha). [Internet]. 2001. Available from: sites/default/files/papers/Dissertation.pdf
Skalski JR, Ngouenet RF. Evaluation of the compliance testing framework for RPA improvement as stated in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-2
Steel AE, Guttorp P, Anderson JJ, Caccia DC. Modeling Juvenile Salmon Migration Using a Simple Markov Chain. Journal of Agricultural, Biological & Environmental Statistics [Internet]. 2001 ;6:80-88. Available from: http://www.jstor.org/stable/1400355
Steel AE, Neuhausser S. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from: http://dx.doi.org/10.2307/1468419
2000
Anderson JJ. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs [Internet]. 2000 ;70:445-470. Available from: http://dx.doi.org/10.1890/0012-9615(2000)070%5B0445:AVBMRS%5D2.0.CO;2
Anderson JJ. Heat Budget of Water Flowing through Hells Canyon and the Effect of Flow Augmentation on Snake River Water Temperature DRAFT. [Internet]. 2000. Available from: sites/default/files/papers/anderson/SRheatbudget.pdf
Anderson JJ. Testimony of James J. Anderson before the Subcommittee on Fisheries, Wildlife and Water of the Senate Committee on Environment and Public Works held in Boise, Idaho, November 20, 2000. [Internet]. 2000. Available from: sites/default/files/papers/anderson/testimonies/senate_fish_2000.pdf
Anderson JJ. Testimony of James J. Anderson before the Subcommittee on Water and Power of the Senate Energy and Natural Resources Committee held in Cascade Locks, Oregon, April 18, 2000. [Internet]. 2000. Available from: sites/default/files/papers/anderson/testimonies/senate_water_2000.pdf
Anderson JJ, Beer WN, Frever T, Hayes JA, Iltis S, Moore MP, Salinger DH, Shaw P, VanHolmes C, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000. Available from: sites/default/files/manuals/crisp16_tc.pdf
Anderson JJ, Hinrichsen RA, VanHolmes C. Effects of Flow Augmentation on Snake River Fall Chinook. [Internet]. 2000. Available from: sites/default/files/papers/anderson/flowaug_fch.pdf
Anderson JJ, Knudsen EE. Decadal climate cycles and declining Columbia River salmon. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 467-484. Available from: sites/default/files/papers/anderson/victoria.pdf
Anderson JJ, Zabel RW, Hinrichsen RA. Modeling the impacts of John Day drawdown on the survival of salmonid stocks. [Internet]. 2000. Available from: sites/default/files/papers/anderson/john.day.jan12.pdf
Beer WN, Anderson JJ. Application of the Out-Migrant Survival Simulator (OMSS) using the SWARM modeling environment to study smolt-predator interactions. [Internet]. 2000. Available from: sites/default/files/papers/swarmfest.pdf
Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 1999 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2000. Available from: sites/default/files/papers/PO.99.pdf
Burgess C, Skalski JR. Evaluation of the 1999 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2000 ;V. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-4
Norris JG, Knudsen EE. Defining equivalent exploitation rate reduction policies for endangered salmon stocks. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 451-466.
1999
Anderson JJ. A Personal In-side Review of PATH. [Internet]. 1999. Available from: sites/default/files/papers/anderson/handout.pdf
Anderson JJ. Testimony of James J. Anderson before the U.S. House of Representatives Committee on Resources Subcommittee on Water and Power and Subcommittee on Fisheries, Conservation, Wildlife and Oceans held in the Longworth House Office Building Washington D.C. May. [Internet]. 1999. Available from: sites/default/files/papers/anderson/testimonies/house_resource_99.pdf
Anderson JJ. Testimony of James J. Anderson before the U.S. Senate Subcommittee on Water and Power in Hood River, Oregon, April 6, 1999. [Internet]. 1999. Available from: sites/default/files/papers/anderson/testimonies/senate_water_99.pdf
Beer WN. Application of the Out-Migrant Survival Simulator using the SWARM modeling environment to study smolt-predator interactions: Modeling Support to Army Corps of Engineers Columbia River Fisheries Programs, DRAFT. [Internet]. 1999. Available from: sites/default/files/papers/swarm.report.coe.fm.pdf
Beer WN. Comparison of mechanistic and empirical methods for modeling embryo and alevin development in Chinook salmon. North American Journal of Aquaculture [Internet]. 1999 ;61:126-134. Available from: http://dx.doi.org/10.1577/1548-8454(1999)061<0126:COMAEM>2.0.CO;2
Beer WN, Hayes JA, Shaw P, Zabel RW, Anderson JJ. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 1999. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02347-1
Burgess C, Townsend RL, Skalski JR. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook and Steelhead, and Hatchery Sockeye in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;IV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-7
Helu LS, Anderson JJ, Sampson DB. An individual-based fishery model and assessing fishery stability. Natural Resource Modeling [Internet]. 1999 ;12. Available from: http://dx.doi.org/10.1111/j.1939-7445.1999.tb00011.x
Kropp S. Optimization of Spill for Reduction of Dam and Reservoir Mortality in CRiSP: Modeling Support to Army Corps of Engineers Columbia River Fisheries Programs, DRAFT. [Internet]. 1999. Available from: sites/default/files/papers/spilldraft.pdf
Norris JG, Frever T, Iltis S. Coast Model Documentation Manual. [Internet]. 1999. Available from: sites/default/files/manuals/coastmodel.pdf
Ryding KE, Skalski JR. Multivariate regression relationships between ocean conditions and early marine survival of coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1999 ;56:2374-2384. Available from: http://dx.doi.org/10.1139/cjfas-56-12-2374
Skalski JR. Statistical Sampling Plan for the 1999 Lower Granite Dam Hydroacoustic Studies. [Internet]. 1999. Available from: sites/default/files/papers/Skalski/Skalski 1999 - Stat Sampling Plan for LGR in 1999.pdf
Steel AE. In-stream factors affecting juvenile salmonid migration, DRAFT. [Internet]. 1999. Available from: sites/default/files/papers/diss824.pdf
Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1997 predictions of run-timing of wild migrant yearling and subyearling chinook and sockeye in the Snake River Basin using program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;III. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-6
1998
Anderson JJ. Testimony of James J. Anderson Associate Professor, School of Fisheries, University of Washington, Before The U.S. House of Representatives Committee on Resources, September 2, 1998 Pasco, Washington. [Internet]. 1998. Available from: sites/default/files/papers/anderson/testimonies/house_resource_98.pdf
Anderson JJ. Testimony of James J. Anderson before the U.S. Senate Subcommittee on Water and Power in Vancouver, Washington, February 17, 1998. [Internet]. 1998. Available from: sites/default/files/papers/anderson/testimonies/senate_water_98.pdf
Beer WN. Growth of Snake River chinook salmon, DRAFT. [Internet]. 1998. Available from: sites/default/files/papers/growth/fishgrow4.pdf
Lady JM, Skalski JR. Estimators of stream residence time of Pacific salmon (Oncorhynchus spp.) based on release-recapture data. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:2580-2587. Available from: http://dx.doi.org/10.1139/f98-132
Ryding KE. Analyzing adult returns to assess ocean effects and salmon survival relationships. Quantitative Ecology and Resource Management. 1998 ;M.S.
Skalski JR, Smith SG, Iwamoto RN, Williams JG, Hoffmann A. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:1484-1493. Available from: http://dx.doi.org/10.1139/cjfas-55-6-1484
Zabel RW, Anderson JJ, Shaw P. A multiple reach model to describe the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:658-667. Available from: http://dx.doi.org/10.1139/f97-281
1997
Anderson JJ. Testimony of James J. Anderson before the U.S. House of Representatives Subcommittee on Water and Power in Lewiston, Idaho, May 31, 1997. [Internet]. 1997. Available from: sites/default/files/papers/anderson/testimonies/house_water.power_97.pdf
Beer WN, Anderson JJ. Modelling the Growth of Salmonid Embryos. Journal of Theoretical Biology [Internet]. 1997 ;189:297-306. Available from: http://dx.doi.org/10.1006/jtbi.1997.0515
Gove NE. Using age-at-harvest data to estimate demographic parameters for wildlife populations. Quantitative Ecology and Resource Management. 1997 ;M.S.
Hayes JA. Analysis of reported release and collection results from Cramer (1996) in comparison to CRiSP v1.5.3. [Internet]. 1997. Available from: sites/default/files/papers/cramer.pdf
Hinrichsen RA, Anderson JJ, Matthews GM, Ebbesmeyer CC. Effects of the ocean and river environments on the survival of Snake River stream-type chinook salmon. In: Marmorek DR, Peters CN, Parnell I Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Vancouver, B.C.: ESSA Technologies Ltd; 1997. Available from: sites/default/files/papers/effectsofocean.pdf
Lowther AB, Skalski JR. A new model for estimating survival probabilities and residualization from a release-recapture study of fall chinook salmon (Oncorhynchus tschawytscha) smolts in the Snake River. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-6
Norris JG. A Simple Spreadsheet Model For Evaluating Recovery Strategies For Snake River Fall Chinook Salmon. [Internet]. 1997. Available from: sites/default/files/papers/global.pdf
Norris JG. Chinook Salmon Harvesting Model CRiSP Harvest Manual. [Internet]. 1997. Available from: sites/default/files/manuals/crisp2_manual.pdf
Norris JG. Review of Salmon Management Model Migration Algorithms DRAFT. [Internet]. 1997. Available from: sites/default/files/papers/mig.pdf
Salinger DH. A Splitting Algorithm for Multistage Stochastic Programming with Application to Hydropower Scheduling. 1997.
Shaw P. Gas Saturation and Sensitivity Analysis Using CRiSP. [Internet]. 1997. Available from: sites/default/files/papers/shawpath.pdf
Townsend RL, Skalski JR. A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-11
Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Spring/Summer Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1997. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-1
Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Subyearling Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1997 ;II. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-2
Zabel RW, Anderson JJ. A model of the travel time of migrating juvenile salmon, with an application to Snake River spring chinook. North American Journal of Fisheries Management [Internet]. 1997 ;17:93-100. Available from: http://dx.doi.org/10.1577/1548-8675(1997)017<0093:AMOTTT>2.3.CO;2
1996
Anderson JJ, Emmett RL, Schiewe MH. Decadal Scale Climate Pattern and Salmon Survival: Indicators, Interactions and Implications. Estuarine and Ocean Survival of Northeastern Pacific Salmon [Internet]. 1996. Available from: sites/default/files/papers/anderson/newport.pdf
Anderson JJ, Hayes JA, Shaw P, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 Theory, Calibration and Validation for SUNOS. [Internet]. 1996. Available from: sites/default/files/manuals/crisp15_theory.pdf
Anderson JJ, Hayes JA, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 User manual for SUNOS. [Internet]. 1996. Available from: sites/default/files/manuals/crisp15_user.pdf
Anderson JJ, Hinrichsen RA. Climate Indicators of Salmon Survival. [Internet]. 1996. Available from: sites/default/files/papers/anderson/draft.pdf
Anderson JJ, Marmorek DR. Review of the Influence of Climate on Salmon. In: Plan for Analyzing and Testing Hypotheses (PATH): Final report on retrospective analyses for fiscal year 1996. Plan for Analyzing and Testing Hypotheses (PATH): Final report on retrospective analyses for fiscal year 1996. Vancouver, B.C.: ESSA Technologies Ltd; 1996. Available from: sites/default/files/papers/anderson/climate.pdf
Beer WN. A growth model for larval salmon with application to field and laboratory observations of chinook salmon. 1996.
Bickford S. retrospective analysis of the results, trends, and methodologies of Columbia and Snake River survival studies, 1971 to 1995. School of Fisheries. 1996 ;M.S.
Hayes JA, Zabel RW, Shaw P, Anderson JJ. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Yearling Chinook at Multiple Locations in the Snake and Columbia River Basins using CRiSP/RealTime. [Internet]. 1996. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P104650
Lady JM. Release-recapture models for estimating the stream residence time of spawning salmon. Quantitative Ecology and Resource Management. 1996 ;M.S.
Lowther AB, Skalski JR. Monte-Carlo Comparison of Confidence Interval Procedures for Estimating Survival in a Release-Recapture Study, with Applications to Snake River Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1996 ;VII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-5
Schlechte JW. Stage-structured analysis and modeling of the Pacific razor clam (Siliqua patula) in a changing environment: investigation of population dynamics and harvest strategies using process models and simulation. School of Fisheries. 1996 ;Ph.D.
Shaw P. Inseason Forecasts Temperature Predictions. [Internet]. 1996. Available from: inseason/methods
Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Subyearling Fall Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1996 ;I. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-12
Townsend RL, Westhagen P, Yasuda D, Skalski JR, Ryding KE. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1996. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-9
White PJ. Application of a Computer Model to the Sacramento River and Major Tributaries in Regard to Chinook Salmon (Oncorhynchus tshawytscha) Juvenile Migration. [Internet]. 1996. Available from: papers/sacramento
1995
Anderson JJ. Analysis of Snake River Spill: Information based on the CRiSP research project. Testimony before the Subcommittee on Water and Power of the Senate Energy and Natural Resources Committee June 1995. [Internet]. 1995. Available from: sites/default/files/papers/anderson/testimonies/senate.june.95.pdf
Anderson JJ. Columbia River World Wide Web Group. [Internet]. 1995. Available from: papers/anderson/webgrp
Anderson JJ. Decline and Recovery of Snake River Salmon. [Internet]. 1995. Available from: sites/default/files/papers/snake.recovery.pdf
Anderson JJ. Notes on Snake River Recovery Plan. [Internet]. 1995. Available from: sites/default/files/papers/winthrop.pdf
Anderson JJ. Testimony presented before the Subcommittee on Water and Power of the US House of Representatives Committee on Resources. June 1995 Washington D.C. [Internet]. 1995. Available from: sites/default/files/papers/anderson/testimonies/house.june.95.pdf
Townsend RL, Westhagen P, Yasuda D. Evaluation of the 1994 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin. [Internet]. 1995. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-8
1994
Anderson JJ. Comparison of Mainstem Recovery Options Recover-1 and DFOP. [Internet]. 1994. Available from: sites/default/files/papers/anderson/recover1.pdf
Hinrichsen RA. Optimization Models For Understanding Migration Patterns of Juvenile Chinook Salmon. [Internet]. 1994. Available from: sites/default/files/papers/hinrich/dissertation.pdf
Liao S. Statistical models for estimating salmon escapement and stream residence time based on stream survey data. Quantitative Ecology and Resource Management. 1994 ;Ph.D.
Norris JG. The Merging of Empirical and Modeling Research: Columbia River Models and Beyond. [Internet]. 1994. Available from: sites/default/files/papers/fri.cqs.pdf
Zabel RW. Spatial and Temporal Models of Migrating Juvenile Salmon with Applications. [Internet]. 1994. Available from: sites/default/files/papers/zabel.pdf
1993
Hoffmann A. Quantifying selection in wild populations using known-fate and mark-recapture data. Quantitative Ecology and Resource Management. 1993 ;Ph.D.
1992
Feist BE, Anderson JJ, Miyamoto R. Potential Impacts of Pile Driving on Juvenile Pink (Oncorhynchus gorbuscha) and Chum (O. keta) Salmon Behavior and Distribution. [Internet]. 1992. Available from: sites/default/files/papers/FRI-UW-9603.pdf
1991
Anderson JJ. Analysis of Fish Response to Flows in the 1991 Pasco Flume Experiments. [Internet]. 1991. Available from: sites/default/files/papers/anderson/acoe92.pdf
Feist BE. Potential Impacts of Pile Driving on Juvenile Pink (Oncorhynchus gorbuscha) and Chum (O. keta) Salmon Behavior and Distribution. [Internet]. 1991. Available from: sites/default/files/papers/Feist1991UWMSThesis.pdf
Smith SG. Assessing hazards in wild populations using auxiliary variables in tag-release models. Quantitative Ecology and Resource Management. 1991 ;Ph.D.
1990
Anderson JJ. Assessment of the risk of pile driving to juvenile fish. [Internet]. 1990. Available from: sites/default/files/papers/anderson/deep.foundations.pdf
1989
Anderson JJ, Feist BE, Miyamoto R, McConnell SO. Measurement of Low Frequency Sound at Bonneville, McNary and Lower Granite Dams--1988. [Internet]. 1989. Available from: sites/default/files/papers/anderson/Anderson1989.pdf