Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2004 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2006 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00005396-2

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2005 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) returning to the Columbia and Snake Rivers. [Internet]. 2006 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025162-3

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2005 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2006 . Available from: sites/default/files/papers/PO.2005.pdf

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2006 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2007 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102789

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2007 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2008 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107213

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111391

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P109799

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2009 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2010 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116012

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2009 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2010 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116013

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2010 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2011 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121108

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2010 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2011 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121107

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2011 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2012 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P127362

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2011 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2012 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P126069

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2012 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2013 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132681

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2012 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2013 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132683

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2013 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2014 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137743

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2013 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2014 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137742

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2014 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tshawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2015 . Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148589

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2014 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2015 . Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148588

Goodwin RA, Nestler JM, Anderson JJ, Kim J, Toney T. Evaluation of Wanapum Dam Bypass Configurations for Outmigrating Juvenile Salmon Using Virtual Fish: Numerical Fish Surrogate (NFS) Analysis. [Internet]. 2005 . Available from: http://el.erdc.usace.army.mil/elpubs/pdf/trel05-7.pdf

Beer WN, Iltis S, Anderson JJ. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003 . Available from: sites/default/files/papers/temp.exposure.6.pdf

Anderson JJ. The Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2002 . Available from: sites/default/files/papers/anderson/flowsurvivalhistory2002.pdf

Goodwin RA, Nestler JM, Anderson JJ, Weber LJ, Loucks DP. Forecasting 3-D fish movement behavior using a Eulerian-Lagrangian-agent method (ELAM). Ecological Modelling [Internet]. 2006 ;192:197-223. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.08.004

Lindley ST, Schick RS, Mora E, Adams PB, Anderson JJ, Greene S, Hanson C, May BP, McEwan D, MacFarlane B, et al. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science [Internet]. 2007 ;5. Available from: http://escholarship.org/uc/item/3653x9xc

Anderson JJ. Heat Budget of Water Flowing through Hells Canyon and the Effect of Flow Augmentation on Snake River Water Temperature DRAFT. [Internet]. 2000 . Available from: sites/default/files/papers/anderson/SRheatbudget.pdf

Lindley ST, Schick RS, Agrawal A, Goslin M, Pearson TE, Mora E, Anderson JJ, May BP, Greene S, Hanson C, et al. Historical population structure of Central Valley steelhead and its alteration by dams. San Francisco Estuary and Watershed Science [Internet]. 2006 ;4. Available from: http://escholarship.org/uc/item/1ss794fc

Anderson JJ. History of the Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2001 . Available from: sites/default/files/papers/anderson/flow_survival_history.pdf

Helu LS, Anderson JJ, Sampson DB. An individual-based fishery model and assessing fishery stability. Natural Resource Modeling [Internet]. 1999 ;12. Available from: http://dx.doi.org/10.1111/j.1939-7445.1999.tb00011.x

Bracis C, Anderson JJ. An investigation of the geomagnetic imprinting hypothesis for salmon. Fisheries Oceanography [Internet]. 2012 ;21:170-181. Available from: http://dx.doi.org/10.1111/j.1365-2419.2012.00617.x

Anderson JJ, Gildea MC, Williams DW, Li T. Linking growth, survival and heterogeneity through vitality. American Naturalist [Internet]. 2008 ;171:E20-E43. Available from: http://dx.doi.org/10.1086/524199

Nestler JM, Goodwin RA, Smith DL, Anderson JJ. Mathematical & Conceptual Framework for the New Discipline of Ecohydraulics. In: Wood P, Hannah D, Sadler J Hydroecology and Ecohydrology: Past, Present and Future. Hydroecology and Ecohydrology: Past, Present and Future. New York: Wiley; 2008. pp. 205-224.

Anderson JJ, Gurarie E, Zabel RW. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling [Internet]. 2005 ;186:196-211. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2005.01.014

Anderson JJ, Feist BE, Miyamoto R, McConnell SO. Measurement of Low Frequency Sound at Bonneville, McNary and Lower Granite Dams--1988. [Internet]. 1989 . Available from: sites/default/files/papers/anderson/Anderson1989.pdf

Zabel RW, Anderson JJ. A model of the travel time of migrating juvenile salmon, with an application to Snake River spring chinook. North American Journal of Fisheries Management [Internet]. 1997 ;17:93-100. Available from: http://dx.doi.org/10.1577/1548-8675(1997)017<0093:AMOTTT>2.3.CO;2

Steel AE, Guttorp P, Anderson JJ, Caccia DC. Modeling Juvenile Salmon Migration Using a Simple Markov Chain. Journal of Agricultural, Biological & Environmental Statistics [Internet]. 2001 ;6:80-88. Available from: http://www.jstor.org/stable/1400355

Anderson JJ, Zabel RW, Hinrichsen RA. Modeling the impacts of John Day drawdown on the survival of salmonid stocks. [Internet]. 2000 . Available from: sites/default/files/papers/anderson/john.day.jan12.pdf

Beer WN, Anderson JJ. Modelling the Growth of Salmonid Embryos. Journal of Theoretical Biology [Internet]. 1997 ;189:297-306. Available from: http://dx.doi.org/10.1006/jtbi.1997.0515

Beer WN, Anderson JJ. Modelling upstream migration of Chinook salmon and steelhead trout. [Internet]. Submitted . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P148614

Zabel RW, Anderson JJ, Shaw P. A multiple reach model to describe the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:658-667. Available from: http://dx.doi.org/10.1139/f97-281

Goodwin RA, Nestler JM, Anderson JJ, Weber LJ. A New Tool to Forecast Fish Movement and Passage. Hydro Review [Internet]. 2007 ;26:58-71. Available from: http://www.hydroworld.com/index/display/article-display/354303/articles/hydro-review/volume-26/issue-4/technical-articles/a-new-tool-to-forecast-fish-movement-and-passage.html