Lady JM. Release-recapture models for estimating the stream residence time of spawning salmon. Quantitative Ecology and Resource Management. 1996 ;M.S.

Hamel OS, Anderson JJ. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085

Buchanan RA, Skalski JR. Relating survival of fall-run Chinook Salmon through the San Joaquin delta to river flow. Environmental Biology of Fishes. 2020 ;103:389-410.

Buchanan RA. Rare migration strategy key during climate change. Nature Climate Change [Internet]. 2021 ;11(11):906 - 907. Available from: https://www.nature.com/articles/s41558-021-01192-6

Parsons AL, Skalski JR. Quantitative Assessment of Salmonid Escapement Techniques. Reviews in Fisheries Science [Internet]. 2010 ;18:301-314. Available from: http://dx.doi.org/10.1080/10641262.2010.513020

Hoffmann A. Quantifying selection in wild populations using known-fate and mark-recapture data. Quantitative Ecology and Resource Management. 1993 ;Ph.D.

Kemp PS, Anderson JJ, Vowles AS. Quantifying behaviour of migratory fish: application of signal detection theory to fisheries engineering. Ecological Engineering [Internet]. 2012 ;41:22-31. Available from: http://dx.doi.org/10.1016/j.ecoleng.2011.12.013

Litzow MA. Quantifying a Novel Climate Through Changes in PDO-Climate and PDO-Salmon Relationships Gosselin JL. Geophysical Research Letters. 2020 ;47.

Gurarie E. Preliminary analysis of hydroacoustically tagged salmon smolt survival and migration rates in the mid-Columbia River. [Internet]. 2006 . Available from: sites/default/files/papers/HTIanalysis_Gurarie2006.pdf

Beer WN, Anderson JJ. Predicting and Monitoring Spring Chinook Salmon Migrations on the Columbia River. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111392

Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2014. [Internet]. 2015 . Available from: https://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P148590

Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2012. [Internet]. 2013 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P132731

Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2009. [Internet]. 2010 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P116033

Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2011. [Internet]. 2011 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P126070

Beer WN, Anderson JJ. Predicting and monitoring adult spring Chinook salmon migration on the Columbia River in 2013. [Internet]. 2014 . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P137744

Beer WN, Anderson JJ. Predicting and Monitoring Adult Spring Chinook Salmon Migration on the Columbia River in 2010. [Internet]. 2011 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P121106

VanHolmes C, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model. [Internet]. 2004 . Available from: sites/default/files/papers/2004SummerSpill.pdf

VanHolmes C, Anderson JJ. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/2003SummerSpill.pdf

Passolt G. A Predator Susceptibility Model of Juvenile Salmon Survival and a Voronoi Tessellation-based Approach for Generating Hypothetical Forest Landscapes. [Internet]. 2012 . Available from: sites/default/files/papers/Passoltmasters.pdf

Feist BE, Anderson JJ, Miyamoto R. Potential Impacts of Pile Driving on Juvenile Pink (Oncorhynchus gorbuscha) and Chum (O. keta) Salmon Behavior and Distribution. [Internet]. 1992 . Available from: sites/default/files/papers/FRI-UW-9603.pdf

Feist BE. Potential Impacts of Pile Driving on Juvenile Pink (Oncorhynchus gorbuscha) and Chum (O. keta) Salmon Behavior and Distribution. [Internet]. 1991 . Available from: sites/default/files/papers/Feist1991UWMSThesis.pdf

Munsch SH. Potential for ecological nonlinearities and thresholds to inform Pacific salmon management Gosselin JL. Ecosphere. 2020 ;11(12).

Anderson JJ. A Personal In-side Review of PATH. [Internet]. 1999 . Available from: sites/default/files/papers/anderson/handout.pdf

Skalski JR, Liao S, Buchanan RA. Performance of Three Alternative Estimators of Stream Residence Time Based on Live and Dead Counts of Salmonids. North American Journal of Fisheries Management [Internet]. 2010 ;30:191-208. Available from: http://dx.doi.org/10.1577/M08-237.1

Skalski JR, Whitlock SL, Townsend RL, Harnish RA. Passage and Survival of Juvenile Salmonid Smolts through Dams in the Columbia and Snake Rivers, 2010–2018. North American Journal of Fisheries Management [Internet]. 2020 . Available from: https://doi.org/10.1002/nafm.10572

Salinger DH, Anderson JJ, Hamel OS. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5

Buchanan RA, Buttermore E, Israel J. Outmigration Survival of a Threatened Steelhead Population through a Tidal Estuary. Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2021 . Available from: https://doi.org/10.1139/cjfas-2020-0467

Nestler JM, Goodwin RA, Smith DL, Anderson JJ, Li S. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. River Research and Applications [Internet]. 2008 ;24:148-168. Available from: http://dx.doi.org/10.1002/rra.1056

Kropp S. Optimization of Spill for Reduction of Dam and Reservoir Mortality in CRiSP: Modeling Support to Army Corps of Engineers Columbia River Fisheries Programs, DRAFT. [Internet]. 1999 . Available from: sites/default/files/papers/spilldraft.pdf

Hinrichsen RA. Optimization Models For Understanding Migration Patterns of Juvenile Chinook Salmon. [Internet]. 1994 . Available from: sites/default/files/papers/hinrich/dissertation.pdf

Anderson JJ, Beer WN. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications [Internet]. 2009 ;19:1989-2003. Available from: http://dx.doi.org/10.1890/08-0477.1

Anderson JJ. Notes on Snake River Recovery Plan. [Internet]. 1995 . Available from: sites/default/files/papers/winthrop.pdf

Goodwin RA, Nestler JM, Anderson JJ, Weber LJ. A New Tool to Forecast Fish Movement and Passage. Hydro Review [Internet]. 2007 ;26:58-71. Available from: http://www.hydroworld.com/index/display/article-display/354303/articles/hydro-review/volume-26/issue-4/technical-articles/a-new-tool-to-forecast-fish-movement-and-passage.html

Lowther AB, Skalski JR. A new model for estimating survival probabilities and residualization from a release-recapture study of fall chinook salmon (Oncorhynchus tschawytscha) smolts in the Snake River. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-6

Ryding KE, Skalski JR. Multivariate regression relationships between ocean conditions and early marine survival of coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1999 ;56:2374-2384. Available from: http://dx.doi.org/10.1139/cjfas-56-12-2374

Skalski JR, Buchanan RA, Townsend RL, Steig TW, Hemstrom S. A Multiple-Release Model to Estimate Route-Specific and Dam Passage Survival at a Hydroelectric Project. North American Journal of Fisheries Management [Internet]. 2009 ;29:670-679. Available from: http://dx.doi.org/10.1577/M07-227.1

Zabel RW, Anderson JJ, Shaw P. A multiple reach model to describe the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:658-667. Available from: http://dx.doi.org/10.1139/f97-281

Lowther AB, Skalski JR. Monte-Carlo Comparison of Confidence Interval Procedures for Estimating Survival in a Release-Recapture Study, with Applications to Snake River Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1996 ;VII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-5

Gurarie E. Models and analysis of animal movements: From individual tracks to mass dispersal. [Internet]. 2008 . Available from: http://wiki.cbr.washington.edu/qerm/sites/qerm/images/9/9f/GurarieDissertationFinalDraft.pdf

Beer WN, Anderson JJ. Modelling upstream migration of Chinook salmon and steelhead trout. [Internet]. Submitted . Available from: https://pisces.bpa.gov/release/documents/DocumentViewer.aspx?doc=P148614