Publications and Papers
. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs [Internet]. 2000 ;70:445-470. Available from: http://dx.doi.org/10.1890/0012-9615(2000)070%5B0445:AVBMRS%5D2.0.CO;2
. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from: http://dx.doi.org/10.2307/1468419
. The Dynamics and Effects of Bacterial Kidney Disease in Snake River Spring Chinook Salmon (Oncorhynchus tshawytscha). [Internet]. 2001 . Available from: sites/default/files/papers/Dissertation.pdf
. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049
. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2001 . Available from: sites/default/files/papers/PO.2000.pdf
. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin, & Combined Wild & Hatchery Salmonids migrating to Rock Island & McNary Dams Using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-5
. Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-1
. Evaluation of the compliance testing framework for RPA improvement as stated in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-2
. History of the Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2001 . Available from: sites/default/files/papers/anderson/flow_survival_history.pdf
. Modeling Juvenile Salmon Migration Using a Simple Markov Chain. Journal of Agricultural, Biological & Environmental Statistics [Internet]. 2001 ;6:80-88. Available from: http://www.jstor.org/stable/1400355
. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x
. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf
. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3
. Development, expansion, and evaluation of release-recapture survival models for Snake River juvenile salmonids, with new algorithms allowing time-dependent individual covariates. Quantitative Ecology and Resource Management. 2002 ;Ph.D.
. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2
. Estimation of demographic parameters used in assessing wildlife population trends. Quantitative Ecology and Resource Management. 2002 ;Ph.D.
. Evaluation of the 2001 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2002 . Available from: sites/default/files/papers/PO.2001.pdf
. Evaluation of the 2002 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;X. Available from: sites/default/files/papers/Skalski/ser2vol10FINAL.pdf
. Factors Associated with Travel Time and Survival of Migrant Yearling Chinook Salmon and Steelhead in the Lower Snake River. North American Journal of Fisheries Management [Internet]. 2002 ;22:385-405. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<0385:FAWTTA>2.0.CO;2
. The Flow Survival Relationship and Flow Augmentation Policy in the Columbia River Basin. [Internet]. 2002 . Available from: sites/default/files/papers/anderson/flowsurvivalhistory2002.pdf
. Inseason Forecasts of Sockeye Salmon Returns to the Bristol Bay Districts of Alaska. [Internet]. 2002 . Available from: sites/default/files/papers/hyun_diss.pdf
. Relationship between antigen concentration and bacterial load in Pacific salmon with bacterial kidney disease. Diseases of Aquatic Organisms [Internet]. 2002 ;51:85-92. Available from: http://dx.doi.org/10.3354/dao051085
. An analysis of smolt survival with implications to flow management. [Internet]. 2003 . Available from: sites/default/files/papers/anderson/FlowSurvivalAnalysisNRC.pdf
. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960
. Evaluation of the 2002 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2003 . Available from: sites/default/files/papers/PO.2002.pdf
. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6
. Exposure of migrating salmon populations in the Columbia/Snake River basins to environmental factors. [Internet]. 2003 . Available from: sites/default/files/papers/temp.exposure.6.pdf
. A parameter estimation routine for the vitality-based survival model. Ecological Modelling [Internet]. 2003 ;166:287-294. Available from: http://dx.doi.org/10.1016/S0304-3800(03)00162-5
. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/2003SummerSpill.pdf
. Statistical Framework for Monitoring Basal Area Coverage of Eelgrass in Puget Sound. [Internet]. 2003 . Available from: sites/default/files/papers/Skalski/Skalski 2003 - Stat Framework for Basal Area Coverage of Eelgrass.pdf
. Stress, Growth and Survival of Juvenile Chinook Salmon. [Internet]. 2003 . Available from: sites/default/files/papers/cobleigh_thesis.pdf
. Total Dissolved Gas submodel parameter calibration for use with CRiSP. [Internet]. 2003 . Available from: sites/default/files/papers/gascalibration2003.2.pdf
. Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation. Hydroinformatics [Internet]. 2004 ;1:254-261. Available from: http://dx.doi.org/10.1142/9789812702838_0031
. Evaluation of the 2003 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon returning to the Columbia and Snake Rivers. [Internet]. 2004 . Available from: sites/default/files/papers/PO.Adult.2003.pdf
. Evaluation of the 2003 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2004 . Available from: sites/default/files/papers/PO.2003.pdf
. Predicted Fall Chinook Survival and Passage Timing Under BiOp and Alternative Summer Spill Programs Using the Columbia River Salmon Passage Model. [Internet]. 2004 . Available from: sites/default/files/papers/2004SummerSpill.pdf
Salmon Insider Columbia Basin Research Newsletter Autumn 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n4autumn.pdf
Salmon Insider Columbia Basin Research Newsletter Spring 2004. [Internet]. 2004 . Available from: sites/default/files/newsletter/newsletter_2004n2spring.pdf