Beer WN, Iltis S, Anderson JJ. Evaluation of the 2008 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) Returning to the Columbia and Snake Rivers. [Internet]. 2009 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P111391

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2007 Predictions of Run-Timing and Survival of Wild Migrant Yearling Chinook and Steelhead on the Columbia and Snake Rivers. [Internet]. 2008 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107213

Townsend RL, Westhagen P, Skalski JR. Evaluation of the 2006 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt at Rock Island, Lower Granite, McNary, John Day and Bonneville Dams using Program Real Time. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2007 ;XIV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025093-2

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2006 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon [Oncorhynchus tschawytscha] Returning to the Columbia and Snake Rivers. [Internet]. 2007 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102789

Griswold J, Townsend RL, Skalski JR. Evaluation of the 2005 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2006 ;XIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-5

Beer WN, Iltis S, Anderson JJ. Evaluation of the 2005 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) returning to the Columbia and Snake Rivers. [Internet]. 2006 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025162-3

Beer WN, Iltis S, VanHolmes C, Anderson JJ. Evaluation of the 2004 Predictions of the Run-Timing of Wild Migrant Yearling Chinook, Subyearling Chinook and Steelhead and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 2006 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00005396-2

Griswold J, Townsend RL, Skalski JR. Evaluation of the 2004 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, John Day, and Bonneville Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2005 ;XII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00013690-4

Beer WN, Salinger DH, Iltis S, Anderson JJ. Evaluation of the 2004 Predictions of Run-size and Passage Distributions of Adult Chinook Salmon (Oncorhynchus tschawytscha) returning to the Columbia and Snake Rivers. [Internet]. 2006 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00020638-2

Burgess C, Skalski JR. Evaluation of the 2003 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2003 ;XI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-6

Burgess C, Skalski JR. Evaluation of the 2002 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolt to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;X. Available from: sites/default/files/papers/Skalski/ser2vol10FINAL.pdf

Burgess C, Skalski JR. Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-1

Burgess C, Skalski JR. Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin, & Combined Wild & Hatchery Salmonids migrating to Rock Island & McNary Dams Using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2001 ;VI. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-5

Burgess C, Skalski JR. Evaluation of the 1999 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook Salmon & Steelhead Trout, & Hatchery Sockeye Salmon in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2000 ;V. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-4

Beer WN, Hayes JA, Shaw P, Zabel RW, Anderson JJ. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling Chinook and Water Quality at Multiple Locations on the Snake and Columbia Rivers using CRiSP/RealTime. [Internet]. 1999 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02347-1

Burgess C, Townsend RL, Skalski JR. Evaluation of the 1998 Predictions of the Run-Timing of Wild Migrant Yearling and Subyearling Chinook and Steelhead, and Hatchery Sockeye in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;IV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-7

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1997 predictions of run-timing of wild migrant yearling and subyearling chinook and sockeye in the Snake River Basin using program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1999 ;III. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-6

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Subyearling Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1997 ;II. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-2

Hayes JA, Zabel RW, Shaw P, Anderson JJ. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Yearling Chinook at Multiple Locations in the Snake and Columbia River Basins using CRiSP/RealTime. [Internet]. 1996 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P104650

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1996 Predictions of the Run-Timing of Wild Migrant Spring/Summer Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1997 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=91572-1

Townsend RL, Westhagen P, Yasuda D, Skalski JR, Ryding KE. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin using Program RealTime. [Internet]. 1996 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-9

Townsend RL, Skalski JR, Yasuda D. Evaluation of the 1995 Predictions of the Run-Timing of Wild Migrant Subyearling Fall Chinook in the Snake River Basin using Program RealTime. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 1996 ;I. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-12

Townsend RL, Westhagen P, Yasuda D. Evaluation of the 1994 Predictions of the Run-Timing of Wild Migrant Yearling Chinook in the Snake River Basin. [Internet]. 1995 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=35885-8

Skalski JR. Evaluation and Recommendations on Alternative Hydroacoustic Array Deployments for the Mouth of the Columbia River to Provide Estimates of Salmonid Smolt Survival and Movements. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2006 ;XX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00025091-1

Perry R, Skalski JR. Evaluating Wetland Restoration Projects in the Columbia River Estuary using Hydroacoustic Telemetry Arrays to Estimate Movement, Survival, and Residence Times of Juvenile Salmonids. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P107849

Beer WN, Anderson JJ. Effect of spill on adult salmon passage delay at Columbia River and Snake River dams. [Internet]. 2012 . Available from: sites/default/files/papers/Spill.and.Passage.whitepaper.2012.pdf

Ham KD, Anderson JJ, Vucelick JA. Effect of Multiple Turbine Passage on Juvenile Snake River Salmonid Survival. [Internet]. 2005 . Available from: http://www.pnl.gov/main/publications/external/technical_reports/PNNL-15450.pdf

Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3

Townsend RL, Skalski JR. A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-11

Anderson JJ, Beer WN, Frever T, Hayes JA, Iltis S, Moore MP, Salinger DH, Shaw P, VanHolmes C, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000 . Available from: sites/default/files/manuals/crisp16_tc.pdf

Anderson JJ, Hayes JA, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 User manual for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_user.pdf

Anderson JJ, Hayes JA, Shaw P, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 Theory, Calibration and Validation for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_theory.pdf

Norris JG. Chinook Salmon Harvesting Model CRiSP Harvest Manual. [Internet]. 1997 . Available from: sites/default/files/manuals/crisp2_manual.pdf

Beer WN, Anderson JJ. Characteristics of annual water temperature profiles in snowmelt-influenced and rain-dominated watersheds. [Internet]. 2007 . Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P102771

Parsons AL, Skalski JR. A Bibliography of Literature on Estimating Salmon Escapement with Focus on the Pacific Northwest. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2009 ;XXV. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=P112588

Skalski JR, Whitlock SL. Vitality models found useful in modeling tag-failure times in acoustic-tag survival studies. [Internet]. 2020 ;8(1):26. Available from: https://doi.org/10.1186/s40317-020-00213-z

Li T, Anderson JJ. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology [Internet]. 2009 ;76:118-131. Available from: http://dx.doi.org/10.1016/j.tpb.2009.05.004

Anderson JJ. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs [Internet]. 2000 ;70:445-470. Available from: http://dx.doi.org/10.1890/0012-9615(2000)070%5B0445:AVBMRS%5D2.0.CO;2

Buchanan RA, Skalski JR. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecological Modelling [Internet]. 2010 ;221:582-589. Available from: http://dx.doi.org/10.1016/j.ecolmodel.2009.11.014

Whitlock SL, Schultz LD, Schreck CB, Hess JE. Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey ( Entosphenus tridentatus ). Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2017 ;74(10):1646 - 1653. Available from: http://www.nrcresearchpress.com/doi/10.1139/cjfas-2016-0154