Publications and Papers

Found 294 results
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Gosselin JL. Cumulative Experiences and Heterogeneity Affect Fish Survival:Examples from a model species (Poecilia reticulata) and salmonid species (Oncorhynchus spp.). School of Aquatic and Fishery Sciences [Internet]. 2011 ;Doctor of Philosophy:211. Available from: sites/default/files/papers/GosselinDissertation.pdf
Buchanan RA, Conquest LL, Courbois J-P. A cost analysis of ranked set sampling to estimate a population mean. Environmetrics. 2005 ;16.
Townsend RL, Skalski JR, Dillingham P, Steig TW. Correcting Bias in Survival Estimation Resulting From Tag Failure in Acoustic and Radiotelemetry Studies. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2006 ;11:183-196. Available from:
Springman KR, Kurath G, Anderson JJ, Emlen JM. Contaminants as viral cofactors: assessing indirect population effects. Aquatic Toxicology [Internet]. 2005 ;71:13-23. Available from:
Gosselin JL. Conservation planning for freshwater-marine carryover effects on Chinook salmon survival Zabel RW, Anderson JJ, Faulkner JR, Baptista AM, Sandford BP. Ecology and Evolution. 2018 ;3:319-332.
Zabel RW, Faulkner J, Smith SG, Anderson JJ, VanHolmes C, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from:
Skalski JR, Townsend RL, Steig TW, Hemstrom S. Comparison of Two Alternative Approaches for Estimating Dam Passage Survival of Salmon Smolts. North American Journal of Fisheries Management [Internet]. 2010 ;30:831-839. Available from:
Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from:
Townsend RL, Skalski JR. A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;IX. Available from:
Steel AE, Neuhausser S. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from:
Beer WN. Comparison of mechanistic and empirical methods for modeling embryo and alevin development in Chinook salmon. North American Journal of Aquaculture [Internet]. 1999 ;61:126-134. Available from:<0126:COMAEM>2.0.CO;2
Anderson JJ. Comparison of Mainstem Recovery Options Recover-1 and DFOP. [Internet]. 1994 . Available from: sites/default/files/papers/anderson/recover1.pdf
Brinck KW. Comparing methods for inferring site biological condition from a sample of site biota. [Internet]. 2002 . Available from: sites/default/files/papers/Brinckthesis.pdf
Gosselin JL, Anderson JJ. Combining Migration History, River Conditions, and Fish Condition to Examine Cross-Life-Stage Effects on Marine Survival in Chinook Salmon. Transactions of the American Fisheries Society. 2017 ;146(3):408-421.
Anderson JJ. Columbia River World Wide Web Group. [Internet]. 1995 . Available from: papers/anderson/webgrp
Anderson JJ, Beer WN, Frever T, Hayes JA, Iltis S, Moore MP, Salinger DH, Shaw P, VanHolmes C, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.6 Theory and Calibration. [Internet]. 2000 . Available from: sites/default/files/manuals/crisp16_tc.pdf
Anderson JJ, Hayes JA, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 User manual for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_user.pdf
Anderson JJ, Hayes JA, Shaw P, Zabel RW. Columbia River Salmon Passage Model CRiSP.1.5 Theory, Calibration and Validation for SUNOS. [Internet]. 1996 . Available from: sites/default/files/manuals/crisp15_theory.pdf
Norris JG, Frever T, Iltis S. Coast Model Documentation Manual. [Internet]. 1999 . Available from: sites/default/files/manuals/coastmodel.pdf
Anderson JJ, Hinrichsen RA. Climate Indicators of Salmon Survival. [Internet]. 1996 . Available from: sites/default/files/papers/anderson/draft.pdf
Norris JG. Chinook Salmon Harvesting Model CRiSP Harvest Manual. [Internet]. 1997 . Available from: sites/default/files/manuals/crisp2_manual.pdf
Anderson JJ. Characterizing System Failure Curves with Vitality. Army Science Conference, 26th [Internet]. 2008 . Available from: sites/default/files/papers/anderson/2008_army26thscienceconf.pdf
Beer WN, Anderson JJ. Characteristics of annual water temperature profiles in snowmelt-influenced and rain-dominated watersheds. [Internet]. 2007 . Available from:
Litzow MA. The changing physical and ecological meanings of North Pacific Ocean climate indices Gosselin JL. Proceedings of the National Academy of Sciences. 2020 ;117:7665-7671.
Skalski J, Millspaugh JJ, Dillingham P, Buchanan RA. Calculating the variance of the finite rate of population change from a matrix model in Mathematica. Special section: Advanced Technology for Environmental Modelling [Internet]. 2007 ;22(3):359 - 364. Available from:
Anderson JJ. Assessment of the risk of pile driving to juvenile fish. [Internet]. 1990 . Available from: sites/default/files/papers/anderson/deep.foundations.pdf
Gosselin JL, Anderson JJ, Sanderson BL, Middleton MA, Sandford BP, Weitkamp LA. Assessing seasonal and biological indices of juvenile Chinook Salmon for freshwater decision triggers that increase ocean survival. Freshwater Science [Internet]. 2022 . Available from:
Smith SG. Assessing hazards in wild populations using auxiliary variables in tag-release models. Quantitative Ecology and Resource Management. 1991 ;Ph.D.
Skalski JR, Steig TW, Hemstrom S. Assessing compliance with fish survival standards: a case study at Rock Island Dam, Washington. Environmental Science & Policy [Internet]. 2012 ;18:45-51. Available from:
Beer WN. Application of the Out-Migrant Survival Simulator using the SWARM modeling environment to study smolt-predator interactions: Modeling Support to Army Corps of Engineers Columbia River Fisheries Programs, DRAFT. [Internet]. 1999 . Available from: sites/default/files/papers/
Beer WN, Anderson JJ. Application of the Out-Migrant Survival Simulator (OMSS) using the SWARM modeling environment to study smolt-predator interactions. [Internet]. 2000 . Available from: sites/default/files/papers/swarmfest.pdf
Weber LJ, Goodwin RA, Li S, Nestler JM, Anderson JJ. Application of an Eulerian-Lagrangian-Agent method (ELAM) to rank alternative designs of a juvenile fish passage facility. J. Hydroinformatics [Internet]. 2006 ;8:271-295. Available from:
White PJ. Application of a Computer Model to the Sacramento River and Major Tributaries in Regard to Chinook Salmon (Oncorhynchus tshawytscha) Juvenile Migration. [Internet]. 1996 . Available from: papers/sacramento
Ryding KE. Analyzing adult returns to assess ocean effects and salmon survival relationships. Quantitative Ecology and Resource Management. 1998 ;M.S.
Anderson JJ. Analysis of Snake River Spill: Information based on the CRiSP research project. Testimony before the Subcommittee on Water and Power of the Senate Energy and Natural Resources Committee June 1995. [Internet]. 1995 . Available from: sites/default/files/papers/anderson/testimonies/senate.june.95.pdf