Publications and Papers

Found 294 results
Book Chapter
Anderson JJ, Knudsen EE. Decadal climate cycles and declining Columbia River salmon. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 467-484. Available from: sites/default/files/papers/anderson/victoria.pdf
Norris JG, Knudsen EE. Defining equivalent exploitation rate reduction policies for endangered salmon stocks. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 451-466.
Salinger DH, Rockafellar RT. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Higle JL, Römisch W Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960
Hinrichsen RA, Anderson JJ, Matthews GM, Ebbesmeyer CC. Effects of the ocean and river environments on the survival of Snake River stream-type chinook salmon. In: Marmorek DR, Peters CN, Parnell I Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Vancouver, B.C.: ESSA Technologies Ltd; 1997. Available from: sites/default/files/papers/effectsofocean.pdf
Nestler JM, Goodwin RA, Smith DL, Anderson JJ. Mathematical & Conceptual Framework for the New Discipline of Ecohydraulics. In: Wood P, Hannah D, Sadler J Hydroecology and Ecohydrology: Past, Present and Future. Hydroecology and Ecohydrology: Past, Present and Future. New York: Wiley; 2008. pp. 205-224.
Anderson JJ, Marmorek DR. Review of the Influence of Climate on Salmon. In: Plan for Analyzing and Testing Hypotheses (PATH): Final report on retrospective analyses for fiscal year 1996. Plan for Analyzing and Testing Hypotheses (PATH): Final report on retrospective analyses for fiscal year 1996. Vancouver, B.C.: ESSA Technologies Ltd; 1996. Available from: sites/default/files/papers/anderson/climate.pdf
Journal Article
Anderson JJ. An agent-based event driven foraging model. Natural Resource Modeling [Internet]. 2002 ;15:55-82. Available from: http://dx.doi.org/10.1111/j.1939-7445.2002.tb00080.x
Perry RW, Buchanan RA, Brandes PL, Burau J, Israel JA. Anadromous salmonids in the delta: new science 2006–2016. San Francisco Estuary and Watershed Science [Internet]. 2016 ;14(2). Available from: https://escholarship.org/uc/item/27f0s5kh
Weber LJ, Goodwin RA, Li S, Nestler JM, Anderson JJ. Application of an Eulerian-Lagrangian-Agent method (ELAM) to rank alternative designs of a juvenile fish passage facility. J. Hydroinformatics [Internet]. 2006 ;8:271-295. Available from: http://dx.doi.org/10.2166/hydro.2006.006
Skalski JR, Steig TW, Hemstrom S. Assessing compliance with fish survival standards: a case study at Rock Island Dam, Washington. Environmental Science & Policy [Internet]. 2012 ;18:45-51. Available from: http://dx.doi.org/10.1016/j.envsci.2012.01.001
Gosselin JL, Anderson JJ, Sanderson BL, Middleton MA, Sandford BP, Weitkamp LA. Assessing seasonal and biological indices of juvenile Chinook Salmon for freshwater decision triggers that increase ocean survival. Freshwater Science [Internet]. 2022 . Available from: https://www.journals.uchicago.edu/doi/10.1086/720007
Skalski J, Millspaugh JJ, Dillingham P, Buchanan RA. Calculating the variance of the finite rate of population change from a matrix model in Mathematica. Special section: Advanced Technology for Environmental Modelling [Internet]. 2007 ;22(3):359 - 364. Available from: https://www.sciencedirect.com/science/article/pii/S1364815206000028
Litzow MA. The changing physical and ecological meanings of North Pacific Ocean climate indices Gosselin JL. Proceedings of the National Academy of Sciences. 2020 ;117:7665-7671.
Gosselin JL, Anderson JJ. Combining Migration History, River Conditions, and Fish Condition to Examine Cross-Life-Stage Effects on Marine Survival in Chinook Salmon. Transactions of the American Fisheries Society. 2017 ;146(3):408-421.
Beer WN. Comparison of mechanistic and empirical methods for modeling embryo and alevin development in Chinook salmon. North American Journal of Aquaculture [Internet]. 1999 ;61:126-134. Available from: http://dx.doi.org/10.1577/1548-8454(1999)061<0126:COMAEM>2.0.CO;2
Steel AE, Neuhausser S. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from: http://dx.doi.org/10.2307/1468419
Skalski JR, Townsend RL, Steig TW, Hemstrom S. Comparison of Two Alternative Approaches for Estimating Dam Passage Survival of Salmon Smolts. North American Journal of Fisheries Management [Internet]. 2010 ;30:831-839. Available from: http://dx.doi.org/10.1577/M09-103.1
Zabel RW, Faulkner J, Smith SG, Anderson JJ, VanHolmes C, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from: http://dx.doi.org/10.1007/s10750-008-9407-z
Gosselin JL. Conservation planning for freshwater-marine carryover effects on Chinook salmon survival Zabel RW, Anderson JJ, Faulkner JR, Baptista AM, Sandford BP. Ecology and Evolution. 2018 ;3:319-332.
Springman KR, Kurath G, Anderson JJ, Emlen JM. Contaminants as viral cofactors: assessing indirect population effects. Aquatic Toxicology [Internet]. 2005 ;71:13-23. Available from: http://dx.doi.org/10.1016/j.aquatox.2004.10.006
Townsend RL, Skalski JR, Dillingham P, Steig TW. Correcting Bias in Survival Estimation Resulting From Tag Failure in Acoustic and Radiotelemetry Studies. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2006 ;11:183-196. Available from: http://dx.doi.org/10.1198/108571106X111323
Buchanan RA, Conquest LL, Courbois J-P. A cost analysis of ranked set sampling to estimate a population mean. Environmetrics. 2005 ;16.
Buchanan RA, Whitlock SL. Diagnosing predated tags in telemetry survival studies of migratory fishes in river systems. [Internet]. 2022 ;10(1):13. Available from: https://doi.org/10.1186/s40317-022-00283-1
Buchanan RA, Skalski J, McMichael GA. Differentiating mortality from delayed migration in subyearling fall Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2009 ;66(12):2243 - 2255. Available from: https://doi.org/10.1139/F09-154
Satterthwaite WH. Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks Gosselin JL. ICES Journal of Marine Science. 2019 ;77:1503-1515.
Beer WN, Anderson JJ. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049
Enders EC, Gessel MH, Anderson JJ, Williams JG. Effects of Decelerating and Accelerating Flows on Juvenile Salmonid Behavior. Transactions of the American Fisheries Society [Internet]. 2012 ;141(2):357-364. Available from: http://dx.doi.org/10.1080/00028487.2012.664604
Skalski J, Seaburg AG, Buchanan RA. The effects of high detection probabilities on model selection in paired release-recapture studies in the era of electronic tagging studies. [Internet]. 2013 ;1(1):12. Available from: https://doi.org/10.1186/2050-3385-1-12
Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2
Salinger DH, Anderson JJ. Effects of Water Temperature and Flow on Adult Salmon Migration Swim Speed and Delay. Transactions of the American Fisheries Society [Internet]. 2006 ;135:188-199. Available from: http://dx.doi.org/10.1577/T04-181.1
Whitlock SL, Quist MC, Dux AM. Effects of Water-Level Management and Hatchery Supplementation on Kokanee Recruitment in Lake Pend Oreille, Idaho. Northwest Science [Internet]. 2018 ;92(2):136 - 148. Available from: http://www.bioone.org/doi/10.3955/046.092.0206
Buchanan RA, , Mackey G, Snow C, Murdoch AR. Estimating Cohort Survival through Tributaries for Salmonid Populations with Variable Ages at Migration. North American Journal of Fisheries ManagementNorth American Journal of Fisheries Management [Internet]. 2015 ;35(5):958 - 973. Available from: https://doi.org/10.1080/02755947.2015.1064837
Buchanan RA, Skalski JR, Smith SG. Estimating the Effects of Smolt Transportation from Different Vantage Points and Management Perspectives. North American Journal of Fisheries Management [Internet]. 2006 ;26:460-472. Available from: http://dx.doi.org/10.1577/M05-080.1
Lady JM, Skalski JR. Estimators of stream residence time of Pacific salmon (Oncorhynchus spp.) based on release-recapture data. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 1998 ;55:2580-2587. Available from: http://dx.doi.org/10.1139/f98-132
Buchanan RA, Skalski JR, Giorgi AE. Evaluating Surrogacy of Hatchery Releases for the Performance of Wild Yearling Chinook Salmon from the Snake River Basin. North American Journal of Fisheries Management [Internet]. 2010 ;30:1258–1269. Available from: http://dx.doi.org/10.1577/M09-175.1